Merge pull request #127 from CartoDB/adds-getis-analysis
Adds getis analysis
This commit is contained in:
Mario de Frutos
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## Getis-Ord's G\*
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Getis-Ord's G\* is a geo-statistical measurement of the intensity of clustering of high or low values. The clustering of high values can be referred to as "hotspots" because these are areas of high activity or large (relative to the global mean) measurement values. Coldspots are clustered areas with low activity or small measurement values.
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### CDB_GetisOrdsG(subquery text, column_name text)
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#### Arguments
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| Name | Type | Description |
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|------|------|-------------|
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| subquery | text | A query of the data you want to pass to the function. It must include `column_name`, a geometry column (usually `the_geom`) and an id column (usually `cartodb_id`) |
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| column_name | text | This is the column of interest for performing this analysis on. This column should be a numeric type. |
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| w_type (optional) | text | Type of weight to use when finding neighbors. Currently available options are 'knn' (default) and 'queen'. Read more about weight types in [PySAL's weights documentation.](https://pysal.readthedocs.io/en/v1.11.0/users/tutorials/weights.html) |
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| num_ngbrs (optional) | integer | Default: 5. If `knn` is chosen, this will set the number of neighbors. If `knn` is not chosen, any entered value will be ignored. Use `NULL` if not choosing `knn`. |
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| permutations (optional) | integer | The number of permutations for calculating p-values. Default: 999 |
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| geom_col (optional) | text | The column where the geometry information is stored. The format must be PostGIS Geometry type (SRID 4326). Default: `the_geom`. |
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| id_col (optional) | text | The column that has the unique row identifier. |
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### Returns
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Returns a table with the following columns.
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| Name | Type | Description |
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|------|------|-------------|
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| z_score | numeric | z-score, a measure of the intensity of clustering of high values (hotspots) or low values (coldspots). Positive values represent 'hotspots', while negative values represent 'coldspots'. |
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| p_value | numeric | p-value, a measure of the significance of the intensity of clustering |
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| p_z_sim | numeric | p-value based on standard normal approximation from permutations |
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| rowid | integer | The original `id_col` that can be used to associate the outputs with the original geometry and inputs |
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#### Example Usage
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The following query returns the original table augmented with the values calculated from the Getis-Ord's G\* analysis.
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```sql
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SELECT i.*, m.z_score, m.p_value
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FROM cdb_crankshaft.CDB_GetisOrdsG('SELECT * FROM incident_reports_clustered',
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'num_incidents') As m
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JOIN incident_reports_clustered As i
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ON i.cartodb_id = m.rowid;
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```
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@@ -0,0 +1,18 @@
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-- Getis-Ord's G
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-- Hotspot/Coldspot Analysis tool
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CREATE OR REPLACE FUNCTION
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CDB_GetisOrdsG(
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subquery TEXT,
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column_name TEXT,
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w_type TEXT DEFAULT 'knn',
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num_ngbrs INT DEFAULT 5,
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permutations INT DEFAULT 999,
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geom_col TEXT DEFAULT 'the_geom',
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id_col TEXT DEFAULT 'cartodb_id')
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RETURNS TABLE (z_score NUMERIC, p_value NUMERIC, p_z_sim NUMERIC, rowid BIGINT)
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AS $$
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from crankshaft.clustering import getis_ord
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return getis_ord(subquery, column_name, w_type, num_ngbrs, permutations, geom_col, id_col)
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$$ LANGUAGE plpythonu;
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-- TODO: make a version that accepts the values as arrays
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@@ -0,0 +1,21 @@
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\pset format unaligned
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\set ECHO all
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\i test/fixtures/getis_data.sql
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SET client_min_messages TO WARNING;
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\set ECHO none
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_cdb_random_seeds
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(1 row)
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rowid|z_score|p_value
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9|-0.7862|0.0500
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22|-0.3955|0.0330
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33|2.7045|0.0050
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35|1.9524|0.0130
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36|-1.2056|0.0170
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37|3.4785|0.0020
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38|-1.4622|0.0020
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40|5.7098|0.0030
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46|3.4704|0.0120
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47|-0.9994|0.0320
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48|-1.3650|0.0340
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(11 rows)
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Vendored
+98
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SET client_min_messages TO WARNING;
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\set ECHO none
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--
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-- Getis-Ord's G* test dataset, subsetted from PySAL examples:
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-- https://github.com/pysal/pysal/tree/952ea04029165048a774d9a1846cf86ad000c096/pysal/examples/stl
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--
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CREATE TABLE getis_data (
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cartodb_id integer,
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the_geom geometry(Geometry,4326),
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hr8893 numeric
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);
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COPY getis_data (cartodb_id, the_geom, hr8893) FROM stdin;
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22 0106000020E61000000100000001030000000100000007000000000000E0B10056C0000000C0B8964340FFFFFFFF4C1756C00000002054964340000000A00F1E56C00000004072964340000000C02D1E56C0000000A0439B434000000060381E56C00000000036B04340000000E0E20056C0000000608CB04340000000E0B10056C0000000C0B8964340 10.8557430000000004
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32 0106000020E6100000010000000103000000010000000B000000FFFFFF1FC26656C0FFFFFFBFE25E4340000000A0D86656C0000000E0976F4340000000A03A6956C0000000C0966F434000000020526956C0000000E08A7F4340000000E0F26556C000000000C87F4340000000E0066656C0000000209C834340000000407F5056C0000000803C83434000000020635056C0000000E016814340000000A0F45056C0000000A0F980434000000060D25056C000000060FA5E4340FFFFFF1FC26656C0FFFFFFBFE25E4340 9.92424500000000087
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43 0106000020E6100000010000000103000000010000000F0000000000004025D856C000000020FA1A43400000008092E256C000000060481B434000000060BCE256C0000000C023144340000000A0D7E856C0FFFFFF1F1B14434000000020BEE956C0000000C030144340FFFFFF9FB0E956C0FFFFFF1F1425434000000000D4E956C0000000C00D5A4340000000A0D3E956C0000000202C5A43400000000004E656C00000004066574340000000E0EEE356C0000000A0E35643400000008099DF56C0000000601B5A43400000000033DB56C0000000804A5B43400000004001D856C00000006079594340000000E0A7D756C0000000E0553543400000004025D856C000000020FA1A4340 5.93309800000000021
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29 0106000020E610000001000000010300000001000000080000000000002025FD55C0FFFFFF1F7F6D434000000080C61056C0000000A04C6D4340000000A0631756C000000000D56D4340000000C05E1756C0FFFFFF5F24754340FFFFFFFF4C1756C00000002054964340000000E0B10056C0000000C0B89643400000006029FD55C000000080C09643400000002025FD55C0FFFFFF1F7F6D4340 3.12759000000000009
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28 0106000020E61000000100000001030000000100000008000000000000C05E1756C0FFFFFF5F24754340000000C0DD2C56C0000000407A75434000000080DE3356C0000000406375434000000020D73356C000000060729B4340000000C02D1E56C0000000A0439B4340000000A00F1E56C00000004072964340FFFFFFFF4C1756C00000002054964340000000C05E1756C0FFFFFF5F24754340 1.57115800000000005
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36 0106000020E6100000010000000103000000010000000D00000000000000EE2C56C000000060424E434000000040F72C56C000000000486A4340000000C0DD2C56C0000000407A754340000000C05E1756C0FFFFFF5F24754340000000A0631756C000000000D56D434000000080C61056C0000000A04C6D4340000000C0BE1056C0000000A0065F4340000000407C1256C0FFFFFF7FA75E434000000000BD1156C000000020A954434000000040D01256C0000000605C524340000000404F1256C000000040734F434000000040011156C000000000AF4D434000000000EE2C56C000000060424E4340 0
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68 0106000020E61000000100000001030000000100000006000000000000809F2D56C00000002078CD4240000000E0F64256C0FFFFFFDF38CD424000000000CE4956C00000004053CD4240000000C0E94956C000000080CDEE424000000020682D56C0FFFFFF7F00EF4240000000809F2D56C00000002078CD4240 3.1461920000000001
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27 0106000020E6100000010000000103000000010000000D000000000000407F5056C0000000803C83434000000060615056C000000040A99B4340000000201F4956C000000000BE9B434000000020D73356C000000060729B434000000080DE3356C00000004063754340000000C0DD2C56C0000000407A75434000000040F72C56C000000000486A4340000000202B4956C000000080AC69434000000040454956C000000040E25E434000000060D25056C000000060FA5E4340000000A0F45056C0000000A0F980434000000020635056C0000000E016814340000000407F5056C0000000803C834340 1.5920399999999999
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52 0106000020E61000000100000001030000000100000008000000000000E0562D56C0000000208910434000000020864856C00000000054104340FFFFFF9FB84956C0000000409110434000000080A84956C0000000A05B1B4340000000803D4956C0FFFFFF9FB63C434000000080062D56C0FFFFFF7FAE3C434000000060492D56C0000000603E214340000000E0562D56C00000002089104340 4.94153299999999973
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15 0106000020E6100000010000000103000000010000000B000000000000806CDC56C00000006020A9434000000080A4ED56C000000020E3A94340000000A050EE56C0FFFFFFDF8BAB434000000000C4ED56C00000000058CD4340000000A039EE56C0000000C062CD4340000000C041EE56C00000006068D44340000000E031EE56C000000080D5D74340000000A054D456C000000020CCD743400000000002CD56C000000080CDCC434000000040CDDD56C0000000407EBA4340000000806CDC56C00000006020A94340 1.9498120000000001
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
|
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
|
||||
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30 0106000020E6100000010000000103000000010000000D0000000000000033DB56C0000000804A5B43400000008099DF56C0000000601B5A4340000000E0EEE356C0000000A0E35643400000000004E656C00000004066574340000000A0D3E956C0000000202C5A4340000000A02EE956C0FFFFFF1F09884340000000A0D9E856C0FFFFFFDF03934340000000A0B8DA56C000000060E592434000000080F4D056C0000000605F9243400000000038D156C0000000A0817F434000000000A0D156C0000000A0FF6B4340000000E0C8DA56C000000080986C43400000000033DB56C0000000804A5B4340 4.41689600000000038
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
|
||||
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|
||||
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
|
||||
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
|
||||
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
|
||||
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
|
||||
56 0106000020E6100000010000000103000000010000000600000000000000181856C000000020FEF4424000000020572D56C0FFFFFF7F74F44240000000E0562D56C0000000208910434000000060492D56C0000000603E21434000000020F21756C000000040DA20434000000000181856C000000020FEF44240 3.90541099999999997
|
||||
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
|
||||
58 0106000020E6100000010000000103000000010000000B00000000000020864856C00000000054104340000000C0FA4856C0FFFFFF3FC70D434000000000E64756C000000060EA0B4340FFFFFFFFF54856C0000000E00F06434000000080504956C0000000C0DEFE4240000000E0744B56C0000000A07CF9424000000000936656C0000000601DFA424000000020396656C0000000A0C31B434000000080A84956C0000000A05B1B4340FFFFFF9FB84956C0000000409110434000000020864856C00000000054104340 3.8941110000000001
|
||||
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
|
||||
62 0106000020E6100000010000000103000000010000000C00000000000020572D56C0FFFFFF7F74F4424000000020682D56C0FFFFFF7F00EF4240000000C0E94956C000000080CDEE4240000000E0EC4956C0000000607AF94240000000E0744B56C0000000A07CF9424000000080504956C0000000C0DEFE4240FFFFFFFFF54856C0000000E00F06434000000000E64756C000000060EA0B4340000000C0FA4856C0FFFFFF3FC70D434000000020864856C00000000054104340000000E0562D56C0000000208910434000000020572D56C0FFFFFF7F74F44240 3.29576199999999986
|
||||
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
|
||||
64 0106000020E6100000010000000103000000010000001100000000000060BC8956C00000004054D24240FFFFFF7F82A256C00000008046D2424000000040D6A956C0000000C024D242400000006098A956C0000000C019DE424000000060E4A856C000000080440A4340000000A003A756C0000000C05F094340000000E08CA756C0000000A00E064340FFFFFF9F39A756C0000000E0A302434000000060F6A756C0000000E03B014340FFFFFF7F92A656C0FFFFFFBF54004340000000E0919A56C0000000E0CE05434000000000CE9456C0000000603BFE4240000000E0A59D56C0FFFFFF5FA4F04240FFFFFFDFFD8C56C00000004087D64240FFFFFF5F418A56C0FFFFFF3F72DA4240000000E0718756C00000000011D6424000000060BC8956C00000004054D24240 3.04184600000000005
|
||||
65 0106000020E6100000010000000103000000010000000B000000000000E0F40F57C0000000C0B5CD4240FFFFFF9FF10F57C0000000000DD34240000000403A1A57C0000000E038DB4240000000001E1A57C00000002044EE424000000040E21957C0000000A0A6024340FFFFFF1F090C57C0000000202E024340000000A0F60157C0000000C08101434000000080EA0157C0000000409BE4424000000080730157C0000000C094E34240000000A0000257C00000002054CD4240000000E0F40F57C0000000C0B5CD4240 1.61801799999999996
|
||||
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
|
||||
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
|
||||
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
|
||||
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
|
||||
71 0106000020E6100000010000000103000000010000000900000000000060378E56C0000000A0EBA74240000000408CA356C0000000C0F4A74240000000E078A356C00000002057CC4240FFFFFF1FC4A256C00000000069CC4240FFFFFF7F82A256C00000008046D2424000000060BC8956C00000004054D2424000000000908956C0000000E0B3CC424000000040968956C000000040EAA7424000000060378E56C0000000A0EBA74240 2.98027100000000011
|
||||
72 0106000020E6100000010000000103000000010000000D00000000000080CD0557C0000000407487424000000000A11057C000000060E7874240000000A0F00F57C000000080AAA04240FFFFFF7F761057C0000000A0EEA0424000000000221057C0000000C028BD4240000000E0F40F57C0000000C0B5CD4240000000A0000257C00000002054CD4240000000007EF456C000000000A6CC424000000060EAF056C0000000E033CC4240000000C0B1F056C00000006063B6424000000060E6E956C000000040FFB5424000000000B0EA56C0000000004286424000000080CD0557C00000004074874240 3.86676699999999984
|
||||
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
|
||||
74 0106000020E61000000100000001030000000100000024000000000000808AAF56C0000000E0CBA24240000000A093AF56C0000000E0549542400000006089B056C00000002032954240000000E0B1B056C0FFFFFFFF0E924240000000202CB256C00000002007924240000000C071B256C000000060B4864240FFFFFFBF2FBE56C0000000A04E874240000000802ABE56C000000080B48C4240FFFFFF7F90C156C0FFFFFF9FCB8C424000000080BAC156C0000000C003924240000000E09DC256C0000000A01B92424000000020C3C256C0000000807895424000000020D4C456C00000008020954240000000C0EAC456C0FFFFFF7F84964240000000E019C656C0000000409A964240000000E035C656C000000080E899424000000000C3C856C000000000D7994240000000A0D9C856C0000000C0899E42400000006055C856C0FFFFFF1FAB9E42400000000047C856C0000000804BA04240000000005BCA56C0000000A0D1A04240000000805DCA56C0000000204EA84240000000E096CB56C0000000E080A8424000000080B0CB56C000000040A1B44240000000C049CE56C0000000E0D8B442400000008032CE56C00000006039C04240000000A067D456C000000060BDC04240000000408AD456C000000000C3CB42400000008089CA56C00000008095CB4240000000C00AC756C00000000081CB4240FFFFFF7F5EC056C0000000805BCD424000000080CAB156C0000000600DCD424000000040D5B156C00000004066AF4240000000800DB056C00000002043AF4240FFFFFF3F5BB056C000000020F4A24240000000808AAF56C0000000E0CBA24240 12.5770339999999994
|
||||
75 0106000020E6100000010000000103000000010000000D000000000000A0A47756C0000000C0DA904240000000E07A7D56C000000060D090424000000060B67D56C00000000057884240000000E0BD7F56C00000008017884240000000C0D87F56C0000000805986424000000040568756C00000000039864240000000605B8756C0000000E0188B4240000000E02F8E56C0000000A0058B424000000060378E56C0000000A0EBA7424000000040968956C000000040EAA7424000000000908956C0000000E0B3CC424000000060627756C000000060F8CC4240000000A0A47756C0000000C0DA904240 7.80359900000000017
|
||||
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
|
||||
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
|
||||
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
|
||||
\.
|
||||
|
||||
|
||||
CREATE INDEX getis_data_gix ON getis_data USING GIST(the_geom);
|
||||
@@ -0,0 +1,15 @@
|
||||
\pset format unaligned
|
||||
\set ECHO all
|
||||
\i test/fixtures/getis_data.sql
|
||||
|
||||
-- set random seed
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
|
||||
-- test against PySAL example dataset 'stl_hom'
|
||||
SELECT rowid, round(z_score, 4) As z_score, round(p_value, 4) As p_value
|
||||
FROM cdb_crankshaft.CDB_GetisOrdsG(
|
||||
'select * from getis_data',
|
||||
'hr8893', 'queen', NULL, 999,
|
||||
'the_geom', 'cartodb_id') As t(z_score, p_value, p_z_sim, rowid)
|
||||
WHERE round(p_value, 4) <= 0.05
|
||||
ORDER BY rowid ASC;
|
||||
@@ -1,3 +1,4 @@
|
||||
"""Import all functions from for clustering"""
|
||||
from moran import *
|
||||
from kmeans import *
|
||||
from getis import *
|
||||
|
||||
@@ -0,0 +1,52 @@
|
||||
"""
|
||||
Getis-Ord's G geostatistics (hotspot/coldspot analysis)
|
||||
"""
|
||||
|
||||
import pysal as ps
|
||||
import plpy
|
||||
from collections import OrderedDict
|
||||
|
||||
# crankshaft module
|
||||
import crankshaft.pysal_utils as pu
|
||||
|
||||
# High level interface ---------------------------------------
|
||||
|
||||
|
||||
def getis_ord(subquery, attr,
|
||||
w_type, num_ngbrs, permutations, geom_col, id_col):
|
||||
"""
|
||||
Getis-Ord's G*
|
||||
Implementation building neighbors with a PostGIS database and PySAL's
|
||||
Getis-Ord's G* hotspot/coldspot module.
|
||||
Andy Eschbacher
|
||||
"""
|
||||
|
||||
# geometries with attributes that are null are ignored
|
||||
# resulting in a collection of not as near neighbors if kNN is chosen
|
||||
|
||||
qvals = OrderedDict([("id_col", id_col),
|
||||
("attr1", attr),
|
||||
("geom_col", geom_col),
|
||||
("subquery", subquery),
|
||||
("num_ngbrs", num_ngbrs)])
|
||||
|
||||
query = pu.construct_neighbor_query(w_type, qvals)
|
||||
|
||||
try:
|
||||
result = plpy.execute(query)
|
||||
# if there are no neighbors, exit
|
||||
if len(result) == 0:
|
||||
return pu.empty_zipped_array(4)
|
||||
except plpy.SPIError, err:
|
||||
plpy.error('Query failed: %s' % err)
|
||||
|
||||
attr_vals = pu.get_attributes(result)
|
||||
|
||||
# build PySAL weight object
|
||||
weight = pu.get_weight(result, w_type, num_ngbrs)
|
||||
|
||||
# calculate Getis-Ord's G* z- and p-values
|
||||
getis = ps.esda.getisord.G_Local(attr_vals, weight,
|
||||
star=True, permutations=permutations)
|
||||
|
||||
return zip(getis.z_sim, getis.p_sim, getis.p_z_sim, weight.id_order)
|
||||
+1
@@ -0,0 +1 @@
|
||||
[[0.004793783909323601, 0.17999999999999999, 0.49808756424021061], [-1.0701189472090842, 0.079000000000000001, 0.14228288580832316], [-0.67867750971877305, 0.42099999999999999, 0.24867110969448558], [-0.67407386707620487, 0.246, 0.25013217644612995], [-0.79495689068870035, 0.33200000000000002, 0.21331928959090596], [-0.49279481022182703, 0.058999999999999997, 0.31107878905057329], [-0.38075627530057132, 0.28399999999999997, 0.35169205342069643], [-0.86710921611314895, 0.23699999999999999, 0.19294108571294855], [-0.78618647240956485, 0.050000000000000003, 0.2158791250244505], [-0.76108527223116984, 0.064000000000000001, 0.22330306830813684], [-0.13340753531942209, 0.247, 0.44693554317763651], [-0.57584545722033043, 0.48999999999999999, 0.28235982246156488], [-0.78882694661192831, 0.433, 0.2151065788731219], [-0.38769767950046219, 0.375, 0.34911988661484239], [-0.56057819488052207, 0.41399999999999998, 0.28754255985169652], [-0.41354017495644935, 0.45500000000000002, 0.339605447117173], [-0.23993577722243081, 0.49099999999999999, 0.40519002230969337], [-0.1389080156677496, 0.40400000000000003, 0.44476141839645233], [-0.25485737510500855, 0.376, 0.39941662953554224], [-0.71218610582902353, 0.17399999999999999, 0.23817476979886087], [-0.54533105995872144, 0.13700000000000001, 0.2927629228714812], [-0.39547917847510977, 0.033000000000000002, 0.34624464252424236], [-0.43052658996257548, 0.35399999999999998, 0.33340631435564982], [-0.37296719193774736, 0.40300000000000002, 0.35458643102865428], [-0.66482612169465694, 0.31900000000000001, 0.25308085650392698], [-0.13772133540823422, 0.34699999999999998, 0.44523032843016275], [-0.6765304487868502, 0.20999999999999999, 0.24935196033890672], [-0.64518763494323472, 0.32200000000000001, 0.25940279912025543], [-0.5078622084312413, 0.41099999999999998, 0.30577498972600159], [-0.12652006733772059, 0.42899999999999999, 0.44966013262301163], [-0.32691133022814595, 0.498, 0.37186747562269029], [0.25533848511500978, 0.42399999999999999, 0.39923083899077472], [2.7045138116476508, 0.0050000000000000001, 0.0034202212972238577], [-0.1551614486076057, 0.44400000000000001, 0.43834701985429037], [1.9524487722567723, 0.012999999999999999, 0.025442473674991528], [-1.2055816465306763, 0.017000000000000001, 0.11398941970467646], [3.478472976017831, 0.002, 0.00025213964072468009], [-1.4621715757903719, 0.002, 0.071847099325659136], [-0.84010307600180256, 0.085000000000000006, 0.20042529779230778], [5.7097646237318243, 0.0030000000000000001, 5.6566262784940591e-09], [1.5082367956567375, 0.065000000000000002, 0.065746966514827365], [-0.58337270103430816, 0.44, 0.27982121546450034], [-0.083271860457022437, 0.45100000000000001, 0.46681768733385554], [-0.46872337815000953, 0.34599999999999997, 0.31963368715684204], [0.18490279849545319, 0.23799999999999999, 0.42665263797981101], [3.470424529947997, 0.012, 0.00025981817437825683], [-0.99942612137154796, 0.032000000000000001, 0.15879415560388499], [-1.3650387953594485, 0.034000000000000002, 0.08612042845912049], [1.8617160516432014, 0.081000000000000003, 0.03132156240215267], [1.1321188945775384, 0.11600000000000001, 0.12879222611766061], [0.064116686050580601, 0.27300000000000002, 0.4744386578180424], [-0.42032194540259099, 0.29999999999999999, 0.33712514016213468], [-0.79581215423980922, 0.123, 0.21307061309098785], [-0.42792753720906046, 0.45600000000000002, 0.33435193892883741], [-1.0629378527428395, 0.051999999999999998, 0.14390506780140866], [-0.54164761752225477, 0.33700000000000002, 0.29403064095211839], [1.0934778886820793, 0.13700000000000001, 0.13709201601893539], [-0.094068785378413719, 0.38200000000000001, 0.46252725802998929], [0.13482026574801856, 0.36799999999999999, 0.44637699118865737], [-0.13976995315653129, 0.34699999999999998, 0.44442087706276601], [-0.051047663924746682, 0.32000000000000001, 0.47964376985626245], [-0.21468297736730158, 0.41699999999999998, 0.41500724761906527], [-0.20873154637330626, 0.38800000000000001, 0.41732890604390893], [-0.32427876152583485, 0.49199999999999999, 0.37286349875557478], [-0.65254842943280977, 0.374, 0.25702372075306734], [-0.48611858196118796, 0.23300000000000001, 0.31344154643990074], [-0.14482354344529477, 0.32600000000000001, 0.44242509660469886], [-0.51052030974200002, 0.439, 0.30484349480873729], [0.56814382285283538, 0.14999999999999999, 0.28496865660103166], [0.58680919931668207, 0.161, 0.27866592887231878], [0.013390357044409013, 0.25800000000000001, 0.49465818005865647], [-0.19050728887961568, 0.41399999999999998, 0.4244558160399462], [-0.60531777422216049, 0.35199999999999998, 0.2724839368239631], [1.0899331115425805, 0.127, 0.13787130480311838], [0.17015055382651084, 0.36899999999999999, 0.43244586845546418], [-0.21738337124409801, 0.40600000000000003, 0.41395479459421991], [1.0329303331079593, 0.079000000000000001, 0.15081825117169467], [1.0218317101096221, 0.104, 0.15343027913308094]]
|
||||
File diff suppressed because one or more lines are too long
@@ -0,0 +1,74 @@
|
||||
import unittest
|
||||
import numpy as np
|
||||
|
||||
|
||||
# from mock_plpy import MockPlPy
|
||||
# plpy = MockPlPy()
|
||||
#
|
||||
# import sys
|
||||
# sys.modules['plpy'] = plpy
|
||||
from helper import plpy, fixture_file
|
||||
|
||||
import crankshaft.clustering as cc
|
||||
import crankshaft.pysal_utils as pu
|
||||
from crankshaft import random_seeds
|
||||
import json
|
||||
|
||||
# Fixture files produced as follows
|
||||
#
|
||||
# import pysal as ps
|
||||
# import numpy as np
|
||||
# import random
|
||||
#
|
||||
# # setup variables
|
||||
# f = ps.open(ps.examples.get_path("stl_hom.dbf"))
|
||||
# y = np.array(f.by_col['HR8893'])
|
||||
# w_queen = ps.queen_from_shapefile(ps.examples.get_path("stl_hom.shp"))
|
||||
#
|
||||
# out_queen = [{"id": index + 1,
|
||||
# "neighbors": [x+1 for x in w_queen.neighbors[index]],
|
||||
# "value": val} for index, val in enumerate(y)]
|
||||
#
|
||||
# with open('neighbors_queen_getis.json', 'w') as f:
|
||||
# f.write(str(out_queen))
|
||||
#
|
||||
# random.seed(1234)
|
||||
# np.random.seed(1234)
|
||||
# lgstar_queen = ps.esda.getisord.G_Local(y, w_queen, star=True,
|
||||
# permutations=999)
|
||||
#
|
||||
# with open('getis_queen.json', 'w') as f:
|
||||
# f.write(str(zip(lgstar_queen.z_sim,
|
||||
# lgstar_queen.p_sim, lgstar_queen.p_z_sim)))
|
||||
|
||||
|
||||
class GetisTest(unittest.TestCase):
|
||||
"""Testing class for Getis-Ord's G* funtion
|
||||
This test replicates the work done in PySAL documentation:
|
||||
https://pysal.readthedocs.io/en/v1.11.0/users/tutorials/autocorrelation.html#local-g-and-g
|
||||
"""
|
||||
|
||||
def setUp(self):
|
||||
plpy._reset()
|
||||
|
||||
# load raw data for analysis
|
||||
self.neighbors_data = json.loads(
|
||||
open(fixture_file('neighbors_getis.json')).read())
|
||||
|
||||
# load pre-computed/known values
|
||||
self.getis_data = json.loads(
|
||||
open(fixture_file('getis.json')).read())
|
||||
|
||||
def test_getis_ord(self):
|
||||
"""Test Getis-Ord's G*"""
|
||||
data = [{'id': d['id'],
|
||||
'attr1': d['value'],
|
||||
'neighbors': d['neighbors']} for d in self.neighbors_data]
|
||||
plpy._define_result('select', data)
|
||||
random_seeds.set_random_seeds(1234)
|
||||
result = cc.getis_ord('subquery', 'value',
|
||||
'queen', None, 999, 'the_geom', 'cartodb_id')
|
||||
result = [(row[0], row[1]) for row in result]
|
||||
expected = np.array(self.getis_data)[:, 0:2]
|
||||
for ([res_z, res_p], [exp_z, exp_p]) in zip(result, expected):
|
||||
self.assertAlmostEqual(res_z, exp_z, delta=1e-2)
|
||||
Reference in New Issue
Block a user