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7
.github/PULL_REQUEST_TEMPLATE.md
vendored
Normal file
7
.github/PULL_REQUEST_TEMPLATE.md
vendored
Normal file
@@ -0,0 +1,7 @@
|
||||
|
||||
- [ ] All declared geometries are `geometry(Geometry, 4326)` for general geoms, or `geometry(Point, 4326)`
|
||||
- [ ] Include python is activated for new functions. Include this before importing modules: `plpy.execute('SELECT cdb_crankshaft._cdb_crankshaft_activate_py()')`
|
||||
- [ ] Docs for public-facing functions are written
|
||||
- [ ] New functions follow the naming conventions: `CDB_NameOfFunction`. Where internal functions begin with an underscore `_`.
|
||||
- [ ] If appropriate, new functions accepts an arbitrary query as an input (see [Crankshaft Issue #6](https://github.com/CartoDB/crankshaft/issues/6) for more information)
|
||||
|
||||
1
.gitignore
vendored
1
.gitignore
vendored
@@ -1,2 +1,3 @@
|
||||
envs/
|
||||
*.pyc
|
||||
.DS_Store
|
||||
|
||||
@@ -1,6 +1,6 @@
|
||||
# Development process
|
||||
|
||||
Please read the Working Process/Quickstart Guide in README.md first.
|
||||
Please read the Working Process/Quickstart Guide in [README.md](https://github.com/CartoDB/crankshaft/blob/master/README.md) first.
|
||||
|
||||
For any modification of crankshaft, such as adding new features,
|
||||
refactoring or bug-fixing, topic branch must be created out of the `develop`
|
||||
@@ -45,8 +45,8 @@ source envs/dev/bin/activate
|
||||
|
||||
Update extension in a working database with:
|
||||
|
||||
* `ALTER EXTENSION crankshaft VERSION TO 'current';`
|
||||
`ALTER EXTENSION crankshaft VERSION TO 'dev';`
|
||||
* `ALTER EXTENSION crankshaft UPDATE TO 'current';`
|
||||
`ALTER EXTENSION crankshaft UPDATE TO 'dev';`
|
||||
|
||||
Note: we keep the current development version install as 'dev' always;
|
||||
we update through the 'current' alias to allow changing the extension
|
||||
@@ -58,7 +58,10 @@ should be dropped manually before the update.
|
||||
If the extension has not previously been installed in a database,
|
||||
it can be installed directly with:
|
||||
|
||||
* `CREATE EXTENSION crankshaft WITH VERSION 'dev';`
|
||||
* `CREATE EXTENSION IF NOT EXISTS plpythonu;`
|
||||
`CREATE EXTENSION IF NOT EXISTS postgis;`
|
||||
`CREATE EXTENSION IF NOT EXISTS cartodb;`
|
||||
`CREATE EXTENSION crankshaft WITH VERSION 'dev';`
|
||||
|
||||
Note: the development extension uses the development python virtual
|
||||
environment automatically.
|
||||
|
||||
10
README.md
10
README.md
@@ -14,7 +14,7 @@ CartoDB Spatial Analysis extension for PostgreSQL.
|
||||
## Requirements
|
||||
|
||||
* pip, virtualenv, PostgreSQL
|
||||
* python-scipy system package (see src/py/README.md)
|
||||
* python-scipy system package (see [src/py/README.md](https://github.com/CartoDB/crankshaft/blob/master/src/py/README.md))
|
||||
|
||||
# Working Process -- Quickstart Guide
|
||||
|
||||
@@ -33,7 +33,7 @@ deployed in production.
|
||||
Developers shall create a new topic branch from `develop` for any new feature
|
||||
or bugfix and commit their changes to it and eventually merge back into
|
||||
the `develop` branch. When a new release is required a Pull Request
|
||||
will be open againt the `develop` branch.
|
||||
will be open against the `develop` branch.
|
||||
|
||||
The `develop` pull requests will be handled by the release manage,
|
||||
who will merge into master where new releases are prepared and tagged.
|
||||
@@ -43,7 +43,7 @@ and developers must not commit or merge into it.
|
||||
## Development Guidelines
|
||||
|
||||
For a detailed description of the development process please see
|
||||
the CONTRIBUTING.md guide.
|
||||
the [CONTRIBUTING.md](https://github.com/CartoDB/crankshaft/blob/master/CONTRIBUTING.md) guide.
|
||||
|
||||
Any modification to the source code (`src/pg/sql` for the SQL extension,
|
||||
`src/py/crankshaft` for the Python package) shall always be done
|
||||
@@ -52,7 +52,7 @@ in a topic branch created from the `develop` branch.
|
||||
Tests, documentation and peer code reviewing are required for all
|
||||
modifications.
|
||||
|
||||
The tests (both for SQL and Pyhton) are executed by running,
|
||||
The tests (both for SQL and Python) are executed by running,
|
||||
from the top directory:
|
||||
|
||||
```
|
||||
@@ -67,5 +67,5 @@ branch.
|
||||
## Release
|
||||
|
||||
The release and deployment process is described in the
|
||||
RELEASE.md guide and it is the responsibility of the designated
|
||||
[RELEASE.md](https://github.com/CartoDB/crankshaft/blob/master/RELEASE.md) guide and it is the responsibility of the designated
|
||||
release manager.
|
||||
|
||||
230
doc/02_moran.md
230
doc/02_moran.md
@@ -1,71 +1,185 @@
|
||||
### Moran's I
|
||||
## Areas of Interest Functions
|
||||
|
||||
#### What is Moran's I and why is it significant for CartoDB?
|
||||
### CDB_AreasOfInterestLocal(subquery text, column_name text)
|
||||
|
||||
Moran's I is a geostatistical calculation which gives a measure of the global
|
||||
clustering and presence of outliers within the geographies in a map. Here global
|
||||
means over all of the geographies in a dataset. Imagine mapping the incidence
|
||||
rates of cancer in neighborhoods of a city. If there were areas covering several
|
||||
neighborhoods with abnormally low rates of cancer, those areas are positively
|
||||
spatially correlated with one another and would be considered a cluster. If
|
||||
there was a single neighborhood with a high rate but with all neighbors on
|
||||
average having a low rate, it would be considered a spatial outlier.
|
||||
This function classifies your data as being part of a cluster, as an outlier, or not part of a pattern based the significance of a classification. The classification happens through an autocorrelation statistic called Local Moran's I.
|
||||
|
||||
While Moran's I gives a global snapshot, there are local indicators for
|
||||
clustering called Local Indicators of Spatial Autocorrelation. Clustering is a
|
||||
process related to autocorrelation -- i.e., a process that compares a
|
||||
geography's attribute to the attribute in neighbor geographies.
|
||||
#### Arguments
|
||||
|
||||
For the example of cancer rates in neighborhoods, since these neighborhoods have
|
||||
a high value for rate of cancer, and all of their neighbors do as well, they are
|
||||
designated as "High High" or simply **HH**. For areas with multiple neighborhoods
|
||||
with low rates of cancer, they are designated as "Low Low" or **LL**. HH and LL
|
||||
naturally fit into the concept of clustering and are in the correlated
|
||||
variables.
|
||||
| Name | Type | Description |
|
||||
|------|------|-------------|
|
||||
| subquery | TEXT | SQL query that exposes the data to be analyzed (e.g., `SELECT * FROM interesting_table`). This query must have the geometry column name `the_geom` and id column name `cartodb_id` unless otherwise specified in the input arguments |
|
||||
| column_name | TEXT | Name of column (e.g., should be `'interesting_value'` instead of `interesting_value` without single quotes) used for the analysis. |
|
||||
| weight type (optional) | TEXT | Type of weight to use when finding neighbors. Currently available options are 'knn' (default) and 'queen'. Read more about weight types in [PySAL's weights documentation](https://pysal.readthedocs.io/en/v1.11.0/users/tutorials/weights.html). |
|
||||
| num_ngbrs (optional) | INT | Number of neighbors if using k-nearest neighbors weight type. Defaults to 5. |
|
||||
| permutations (optional) | INT | Number of permutations to check against a random arrangement of the values in `column_name`. This influences the accuracy of the output field `significance`. Defaults to 99. |
|
||||
| geom_col (optional) | TEXT | The column name for the geometries. Defaults to `'the_geom'` |
|
||||
| id_col (optional) | TEXT | The column name for the unique ID of each geometry/value pair. Defaults to `'cartodb_id'`. |
|
||||
|
||||
"Anticorrelated" geogs are in **LH** and **HL** regions -- that is, regions
|
||||
where a geog has a high value and it's neighbors, on average, have a low value
|
||||
(or vice versa). An example of this is a "gated community" or placement of a
|
||||
city housing project in a rich region. These deliberate developments have
|
||||
opposite median income as compared to the neighbors around them. They have a
|
||||
high (or low) value while their neighbors have a low (or high) value. They exist
|
||||
typically as islands, and in rare circumstances can extend as chains dividing
|
||||
**LL** or **HH**.
|
||||
#### Returns
|
||||
|
||||
Strong policies such as rent stabilization (probably) tend to prevent the
|
||||
clustering of high rent areas as they integrate middle class incomes. Luxury
|
||||
apartment buildings, which are a kind of gated community, probably tend to skew
|
||||
an area's median income upwards while housing projects have the opposite effect.
|
||||
What are the nuggets in the analysis?
|
||||
A table with the following columns.
|
||||
|
||||
Two functions are available to compute Moran I statistics:
|
||||
| Column Name | Type | Description |
|
||||
|-------------|------|-------------|
|
||||
| moran | NUMERIC | Value of Moran's I (spatial autocorrelation measure) for the geometry with id of `rowid` |
|
||||
| quads | TEXT | Classification of geometry. Result is one of 'HH' (a high value with neighbors high on average), 'LL' (opposite of 'HH'), 'HL' (a high value surrounded by lows on average), and 'LH' (opposite of 'HL'). Null values are returned when nulls exist in the original data. |
|
||||
| significance | NUMERIC | The statistical significance (from 0 to 1) of a cluster or outlier classification. Lower numbers are more significant. |
|
||||
| rowid | INT | Row id of the values which correspond to the input rows. |
|
||||
| vals | NUMERIC | Values from `'column_name'`. |
|
||||
|
||||
* `cdb_moran_local` computes Moran I measures, quad classification and
|
||||
significance values from numerial values associated to geometry entities
|
||||
in an input table. The geometries should be contiguous polygons When
|
||||
then `queen` `w_type` is used.
|
||||
* `cdb_moran_local_rate` computes the same statistics using a ratio between
|
||||
numerator and denominator columns of a table.
|
||||
|
||||
The parameters for `cdb_moran_local` are:
|
||||
#### Example Usage
|
||||
|
||||
* `table` name of the table that contains the data values
|
||||
* `attr` name of the column
|
||||
* `signficance` significance threshold for the quads values
|
||||
* `num_ngbrs` number of neighbors to consider (default: 5)
|
||||
* `permutations` number of random permutations for calculation of
|
||||
pseudo-p values (default: 99)
|
||||
* `geom_column` number of the geometry column (default: "the_geom")
|
||||
* `id_col` PK column of the table (default: "cartodb_id")
|
||||
* `w_type` Weight types: can be "knn" for k-nearest neighbor weights
|
||||
or "queen" for contiguity based weights.
|
||||
```sql
|
||||
SELECT
|
||||
c.the_geom,
|
||||
aoi.quads,
|
||||
aoi.significance,
|
||||
c.num_cyclists_per_total_population
|
||||
FROM CDB_GetAreasOfInterestLocal('SELECT * FROM commute_data'
|
||||
'num_cyclists_per_total_population') As aoi
|
||||
JOIN commute_data As c
|
||||
ON c.cartodb_id = aoi.rowid;
|
||||
```
|
||||
|
||||
The function returns a table with the following columns:
|
||||
### CDB_AreasOfInterestGlobal(subquery text, column_name text)
|
||||
|
||||
* `moran` Moran's value
|
||||
* `quads` quad classification ('HH', 'LL', 'HL', 'LH' or 'Not significant')
|
||||
* `significance` significance value
|
||||
* `ids` id of the corresponding record in the input table
|
||||
This function identifies the extent to which geometries cluster (the groupings of geometries with similarly high or low values relative to the mean) or form outliers (areas where geometries have values opposite of their neighbors). The output of this function gives values between -1 and 1 as well as a significance of that classification. Values close to 0 mean that there is little to no distribution of values as compared to what one would see in a randomly distributed collection of geometries and values.
|
||||
|
||||
Function `cdb_moran_local_rate` only differs in that the `attr` input
|
||||
parameter is substituted by `numerator` and `denominator`.
|
||||
#### Arguments
|
||||
|
||||
| Name | Type | Description |
|
||||
|------|------|-------------|
|
||||
| subquery | TEXT | SQL query that exposes the data to be analyzed (e.g., `SELECT * FROM interesting_table`). This query must have the geometry column name `the_geom` and id column name `cartodb_id` unless otherwise specified in the input arguments |
|
||||
| column_name | TEXT | Name of column (e.g., should be `'interesting_value'` instead of `interesting_value` without single quotes) used for the analysis. |
|
||||
| weight type (optional) | TEXT | Type of weight to use when finding neighbors. Currently available options are 'knn' (default) and 'queen'. Read more about weight types in [PySAL's weights documentation](https://pysal.readthedocs.io/en/v1.11.0/users/tutorials/weights.html). |
|
||||
| num_ngbrs (optional) | INT | Number of neighbors if using k-nearest neighbors weight type. Defaults to 5. |
|
||||
| permutations (optional) | INT | Number of permutations to check against a random arrangement of the values in `column_name`. This influences the accuracy of the output field `significance`. Defaults to 99. |
|
||||
| geom_col (optional) | TEXT | The column name for the geometries. Defaults to `'the_geom'` |
|
||||
| id_col (optional) | TEXT | The column name for the unique ID of each geometry/value pair. Defaults to `'cartodb_id'`. |
|
||||
|
||||
#### Returns
|
||||
|
||||
A table with the following columns.
|
||||
|
||||
| Column Name | Type | Description |
|
||||
|-------------|------|-------------|
|
||||
| moran | NUMERIC | Value of Moran's I (spatial autocorrelation measure) for the entire dataset. Values closer to one indicate cluster, closer to -1 mean more outliers, and near zero indicates a random distribution of data. |
|
||||
| significance | NUMERIC | The statistical significance of the `moran` measure. |
|
||||
|
||||
#### Examples
|
||||
|
||||
```sql
|
||||
SELECT *
|
||||
FROM CDB_AreasOfInterestGlobal('SELECT * FROM commute_data', 'num_cyclists_per_total_population')
|
||||
```
|
||||
|
||||
### CDB_AreasOfInterestLocalRate(subquery text, numerator_column text, denominator_column text)
|
||||
|
||||
Just like `CDB_AreasOfInterestLocal`, this function classifies your data as being part of a cluster, as an outlier, or not part of a pattern based the significance of a classification. This function differs in that it calculates the classifications based on input `numerator` and `denominator` columns for finding the areas where there are clusters and outliers for the resulting rate of those two values.
|
||||
|
||||
#### Arguments
|
||||
|
||||
| Name | Type | Description |
|
||||
|------|------|-------------|
|
||||
| subquery | TEXT | SQL query that exposes the data to be analyzed (e.g., `SELECT * FROM interesting_table`). This query must have the geometry column name `the_geom` and id column name `cartodb_id` unless otherwise specified in the input arguments |
|
||||
| numerator | TEXT | Name of the numerator for forming a rate to be used in analysis. |
|
||||
| denominator | TEXT | Name of the denominator for forming a rate to be used in analysis. |
|
||||
| weight type (optional) | TEXT | Type of weight to use when finding neighbors. Currently available options are 'knn' (default) and 'queen'. Read more about weight types in [PySAL's weights documentation](https://pysal.readthedocs.io/en/v1.11.0/users/tutorials/weights.html). |
|
||||
| num_ngbrs (optional) | INT | Number of neighbors if using k-nearest neighbors weight type. Defaults to 5. |
|
||||
| permutations (optional) | INT | Number of permutations to check against a random arrangement of the values in `column_name`. This influences the accuracy of the output field `significance`. Defaults to 99. |
|
||||
| geom_col (optional) | TEXT | The column name for the geometries. Defaults to `'the_geom'` |
|
||||
| id_col (optional) | TEXT | The column name for the unique ID of each geometry/value pair. Defaults to `'cartodb_id'`. |
|
||||
|
||||
#### Returns
|
||||
|
||||
A table with the following columns.
|
||||
|
||||
| Column Name | Type | Description |
|
||||
|-------------|------|-------------|
|
||||
| moran | NUMERIC | Value of Moran's I (spatial autocorrelation measure) for the geometry with id of `rowid` |
|
||||
| quads | TEXT | Classification of geometry. Result is one of 'HH' (a high value with neighbors high on average), 'LL' (opposite of 'HH'), 'HL' (a high value surrounded by lows on average), and 'LH' (opposite of 'HL'). Null values are returned when nulls exist in the original data. |
|
||||
| significance | NUMERIC | The statistical significance (from 0 to 1) of a cluster or outlier classification. Lower numbers are more significant. |
|
||||
| rowid | INT | Row id of the values which correspond to the input rows. |
|
||||
| vals | NUMERIC | Values from `'column_name'`. |
|
||||
|
||||
|
||||
#### Example Usage
|
||||
|
||||
```sql
|
||||
SELECT
|
||||
c.the_geom,
|
||||
aoi.quads,
|
||||
aoi.significance,
|
||||
c.cyclists_per_total_population
|
||||
FROM CDB_GetAreasOfInterestLocalRate('SELECT * FROM commute_data'
|
||||
'num_cyclists',
|
||||
'total_population') As aoi
|
||||
JOIN commute_data As c
|
||||
ON c.cartodb_id = aoi.rowid;
|
||||
```
|
||||
|
||||
### CDB_AreasOfInterestGlobalRate(subquery text, column_name text)
|
||||
|
||||
This function identifies the extent to which geometries cluster (the groupings of geometries with similarly high or low values relative to the mean) or form outliers (areas where geometries have values opposite of their neighbors). The output of this function gives values between -1 and 1 as well as a significance of that classification. Values close to 0 mean that there is little to no distribution of values as compared to what one would see in a randomly distributed collection of geometries and values.
|
||||
|
||||
#### Arguments
|
||||
|
||||
| Name | Type | Description |
|
||||
|------|------|-------------|
|
||||
| subquery | TEXT | SQL query that exposes the data to be analyzed (e.g., `SELECT * FROM interesting_table`). This query must have the geometry column name `the_geom` and id column name `cartodb_id` unless otherwise specified in the input arguments |
|
||||
| numerator | TEXT | Name of the numerator for forming a rate to be used in analysis. |
|
||||
| denominator | TEXT | Name of the denominator for forming a rate to be used in analysis. |
|
||||
| weight type (optional) | TEXT | Type of weight to use when finding neighbors. Currently available options are 'knn' (default) and 'queen'. Read more about weight types in [PySAL's weights documentation](https://pysal.readthedocs.io/en/v1.11.0/users/tutorials/weights.html). |
|
||||
| num_ngbrs (optional) | INT | Number of neighbors if using k-nearest neighbors weight type. Defaults to 5. |
|
||||
| permutations (optional) | INT | Number of permutations to check against a random arrangement of the values in `column_name`. This influences the accuracy of the output field `significance`. Defaults to 99. |
|
||||
| geom_col (optional) | TEXT | The column name for the geometries. Defaults to `'the_geom'` |
|
||||
| id_col (optional) | TEXT | The column name for the unique ID of each geometry/value pair. Defaults to `'cartodb_id'`. |
|
||||
|
||||
#### Returns
|
||||
|
||||
A table with the following columns.
|
||||
|
||||
| Column Name | Type | Description |
|
||||
|-------------|------|-------------|
|
||||
| moran | NUMERIC | Value of Moran's I (spatial autocorrelation measure) for the entire dataset. Values closer to one indicate cluster, closer to -1 mean more outliers, and near zero indicates a random distribution of data. |
|
||||
| significance | NUMERIC | The statistical significance of the `moran` measure. |
|
||||
|
||||
#### Examples
|
||||
|
||||
```sql
|
||||
SELECT *
|
||||
FROM CDB_AreasOfInterestGlobalRate('SELECT * FROM commute_data',
|
||||
'num_cyclists',
|
||||
'total_population')
|
||||
```
|
||||
|
||||
## Hotspot, Coldspot, and Outlier Functions
|
||||
|
||||
These functions are convenience functions for extracting only information that you are interested in exposing based on the outputs of the `CDB_AreasOfInterest` functions. For instance, you can use `CDB_GetSpatialHotspots` to output only the classifications of `HH` and `HL`.
|
||||
|
||||
### Non-rate functions
|
||||
|
||||
#### CDB_GetSpatialHotspots
|
||||
This function's inputs and outputs exactly mirror `CDB_AreasOfInterestLocal` except that the outputs are filtered to be only 'HH' and 'HL' (areas of high values). For more information about this function's use, see `CDB_AreasOfInterestLocal`.
|
||||
|
||||
#### CDB_GetSpatialColdspots
|
||||
This function's inputs and outputs exactly mirror `CDB_AreasOfInterestLocal` except that the outputs are filtered to be only 'LL' and 'LH' (areas of low values). For more information about this function's use, see `CDB_AreasOfInterestLocal`.
|
||||
|
||||
#### CDB_GetSpatialOutliers
|
||||
This function's inputs and outputs exactly mirror `CDB_AreasOfInterestLocal` except that the outputs are filtered to be only 'HL' and 'LH' (areas where highs or lows are surrounded by opposite values on average). For more information about this function's use, see `CDB_AreasOfInterestLocal`.
|
||||
|
||||
### Rate functions
|
||||
|
||||
#### CDB_GetSpatialHotspotsRate
|
||||
|
||||
This function's inputs and outputs exactly mirror `CDB_AreasOfInterestLocalRate` except that the outputs are filtered to be only 'HH' and 'HL' (areas of high values). For more information about this function's use, see `CDB_AreasOfInterestLocalRate`.
|
||||
|
||||
#### CDB_GetSpatialColdspotsRate
|
||||
|
||||
This function's inputs and outputs exactly mirror `CDB_AreasOfInterestLocalRate` except that the outputs are filtered to be only 'LL' and 'LH' (areas of low values). For more information about this function's use, see `CDB_AreasOfInterestLocalRate`.
|
||||
|
||||
#### CDB_GetSpatialOutliersRate
|
||||
|
||||
This function's inputs and outputs exactly mirror `CDB_AreasOfInterestLocalRate` except that the outputs are filtered to be only 'HL' and 'LH' (areas where highs or lows are surrounded by opposite values on average). For more information about this function's use, see `CDB_AreasOfInterestLocalRate`.
|
||||
|
||||
78
doc/07_gravity.md
Normal file
78
doc/07_gravity.md
Normal file
@@ -0,0 +1,78 @@
|
||||
## Gravity Model
|
||||
|
||||
Gravity Models are derived from Newton's Law of Gravity and are used to predict the interaction between a group of populated areas (sources) and a specific target among a group of potential targets, in terms of an attraction factor (weight)
|
||||
|
||||
**CDB_Gravity** is based on the model defined in *Huff's Law of Shopper attraction (1963)*
|
||||
|
||||
### CDB_Gravity(t_id bigint[], t_geom geometry[], t_weight numeric[], s_id bigint[], s_geom geometry[], s_pop numeric[], target bigint, radius integer, minval numeric DEFAULT -10e307)
|
||||
|
||||
#### Arguments
|
||||
|
||||
| Name | Type | Description |
|
||||
|------|------|-------------|
|
||||
| t_id | bigint[] | Array of targets ID |
|
||||
| t_geom | geometry[] | Array of targets' geometries |
|
||||
| t_weight | numeric[] | Array of targets's weights |
|
||||
| s_id | bigint[] | Array of sources ID |
|
||||
| s_geom | geometry[] | Array of sources' geometries |
|
||||
| s_pop | numeric[] | Array of sources's population |
|
||||
| target | bigint | ID of the target under study |
|
||||
| radius | integer | Radius in meters around the target under study that will be taken into account|
|
||||
| minval (optional) | numeric | Lowest accepted value of weight, defaults to numeric min_value |
|
||||
|
||||
### CDB_Gravity( target_query text, weight_column text, source_query text, pop_column text, target bigint, radius integer, minval numeric DEFAULT -10e307)
|
||||
|
||||
#### Arguments
|
||||
|
||||
| Name | Type | Description |
|
||||
|------|------|-------------|
|
||||
| target_query | text | Query that defines targets |
|
||||
| weight_column | text | Column name of weights |
|
||||
| source_query | text | Query that defines sources |
|
||||
| pop_column | text | Column name of population |
|
||||
| target | bigint | cartodb_id of the target under study |
|
||||
| radius | integer | Radius in meters around the target under study that will be taken into account|
|
||||
| minval (optional) | numeric | Lowest accepted value of weight, defaults to numeric min_value |
|
||||
|
||||
|
||||
### Returns
|
||||
|
||||
| Column Name | Type | Description |
|
||||
|-------------|------|-------------|
|
||||
| the_geom | geometry | Geometries of the sources within the radius |
|
||||
| source_id | bigint | ID of the source |
|
||||
| target_id | bigint | Target ID from input |
|
||||
| dist | numeric | Distance in meters source to target (if not points, distance between centroids) |
|
||||
| h | numeric | Probability of patronage |
|
||||
| hpop | numeric | Patronaging population |
|
||||
|
||||
|
||||
#### Example Usage
|
||||
|
||||
```sql
|
||||
with t as (
|
||||
SELECT
|
||||
array_agg(cartodb_id::bigint) as id,
|
||||
array_agg(the_geom) as g,
|
||||
array_agg(coalesce(gla,0)::numeric) as w
|
||||
FROM
|
||||
abel.centros_comerciales_de_madrid
|
||||
WHERE not no_cc
|
||||
),
|
||||
s as (
|
||||
SELECT
|
||||
array_agg(cartodb_id::bigint) as id,
|
||||
array_agg(center) as g,
|
||||
array_agg(coalesce(t1_1, 0)::numeric) as p
|
||||
FROM
|
||||
sscc_madrid
|
||||
)
|
||||
select
|
||||
g.the_geom,
|
||||
trunc(g.h,2) as h,
|
||||
round(g.hpop) as hpop,
|
||||
trunc(g.dist/1000,2) as dist_km
|
||||
FROM t, s, CDB_Gravity1(t.id, t.g, t.w, s.id, s.g, s.p, newmall_ID, 100000, 5000) g
|
||||
```
|
||||
|
||||
|
||||
24
doc/docs_template.md
Normal file
24
doc/docs_template.md
Normal file
@@ -0,0 +1,24 @@
|
||||
|
||||
## Name
|
||||
|
||||
## Synopsis
|
||||
|
||||
## Description
|
||||
|
||||
Availability: v...
|
||||
|
||||
## Examples
|
||||
|
||||
```SQL
|
||||
-- example of the function in use
|
||||
SELECT cdb_awesome_function(the_geom, 'total_pop')
|
||||
FROM table_name
|
||||
```
|
||||
|
||||
## API Usage
|
||||
|
||||
_asdf_
|
||||
|
||||
## See Also
|
||||
|
||||
_Other function pages_
|
||||
115
src/pg/sql/07_gravity.sql
Normal file
115
src/pg/sql/07_gravity.sql
Normal file
@@ -0,0 +1,115 @@
|
||||
CREATE OR REPLACE FUNCTION CDB_Gravity(
|
||||
IN target_query text,
|
||||
IN weight_column text,
|
||||
IN source_query text,
|
||||
IN pop_column text,
|
||||
IN target bigint,
|
||||
IN radius integer,
|
||||
IN minval numeric DEFAULT -10e307
|
||||
)
|
||||
RETURNS TABLE(
|
||||
the_geom geometry,
|
||||
source_id bigint,
|
||||
target_id bigint,
|
||||
dist numeric,
|
||||
h numeric,
|
||||
hpop numeric) AS $$
|
||||
DECLARE
|
||||
t_id bigint[];
|
||||
t_geom geometry[];
|
||||
t_weight numeric[];
|
||||
s_id bigint[];
|
||||
s_geom geometry[];
|
||||
s_pop numeric[];
|
||||
BEGIN
|
||||
EXECUTE 'WITH foo as('+target_query+') SELECT array_agg(cartodb_id), array_agg(the_geom), array_agg(' || weight_column || ') FROM foo' INTO t_id, t_geom, t_weight;
|
||||
EXECUTE 'WITH foo as('+source_query+') SELECT array_agg(cartodb_id), array_agg(the_geom), array_agg(' || pop_column || ') FROM foo' INTO s_id, s_geom, s_pop;
|
||||
RETURN QUERY
|
||||
SELECT g.* FROM t, s, CDB_Gravity(t_id, t_geom, t_weight, s_id, s_geom, s_pop, target, radius, minval) g;
|
||||
END;
|
||||
$$ language plpgsql;
|
||||
|
||||
CREATE OR REPLACE FUNCTION CDB_Gravity(
|
||||
IN t_id bigint[],
|
||||
IN t_geom geometry[],
|
||||
IN t_weight numeric[],
|
||||
IN s_id bigint[],
|
||||
IN s_geom geometry[],
|
||||
IN s_pop numeric[],
|
||||
IN target bigint,
|
||||
IN radius integer,
|
||||
IN minval numeric DEFAULT -10e307
|
||||
)
|
||||
RETURNS TABLE(
|
||||
the_geom geometry,
|
||||
source_id bigint,
|
||||
target_id bigint,
|
||||
dist numeric,
|
||||
h numeric,
|
||||
hpop numeric) AS $$
|
||||
DECLARE
|
||||
t_type text;
|
||||
s_type text;
|
||||
t_center geometry[];
|
||||
s_center geometry[];
|
||||
BEGIN
|
||||
t_type := GeometryType(t_geom[1]);
|
||||
s_type := GeometryType(s_geom[1]);
|
||||
IF t_type = 'POINT' THEN
|
||||
t_center := t_geom;
|
||||
ELSE
|
||||
WITH tmp as (SELECT unnest(t_geom) as g) SELECT array_agg(ST_Centroid(g)) INTO t_center FROM tmp;
|
||||
END IF;
|
||||
IF s_type = 'POINT' THEN
|
||||
s_center := s_geom;
|
||||
ELSE
|
||||
WITH tmp as (SELECT unnest(s_geom) as g) SELECT array_agg(ST_Centroid(g)) INTO s_center FROM tmp;
|
||||
END IF;
|
||||
RETURN QUERY
|
||||
with target0 as(
|
||||
SELECT unnest(t_center) as tc, unnest(t_weight) as tw, unnest(t_id) as td
|
||||
),
|
||||
source0 as(
|
||||
SELECT unnest(s_center) as sc, unnest(s_id) as sd, unnest (s_geom) as sg, unnest(s_pop) as sp
|
||||
),
|
||||
prev0 as(
|
||||
SELECT
|
||||
source0.sg,
|
||||
source0.sd as sourc_id,
|
||||
coalesce(source0.sp,0) as sp,
|
||||
target.td as targ_id,
|
||||
coalesce(target.tw,0) as tw,
|
||||
GREATEST(1.0,ST_Distance(geography(target.tc), geography(source0.sc)))::numeric as distance
|
||||
FROM source0
|
||||
CROSS JOIN LATERAL
|
||||
(
|
||||
SELECT
|
||||
*
|
||||
FROM target0
|
||||
WHERE tw > minval
|
||||
AND ST_DWithin(geography(source0.sc), geography(tc), radius)
|
||||
) AS target
|
||||
),
|
||||
deno as(
|
||||
SELECT
|
||||
sourc_id,
|
||||
sum(tw/distance) as h_deno
|
||||
FROM
|
||||
prev0
|
||||
GROUP BY sourc_id
|
||||
)
|
||||
SELECT
|
||||
p.sg as the_geom,
|
||||
p.sourc_id as source_id,
|
||||
p.targ_id as target_id,
|
||||
case when p.distance > 1 then p.distance else 0.0 end as dist,
|
||||
100*(p.tw/p.distance)/d.h_deno as h,
|
||||
p.sp*(p.tw/p.distance)/d.h_deno as hpop
|
||||
FROM
|
||||
prev0 p,
|
||||
deno d
|
||||
WHERE
|
||||
p.targ_id = target AND
|
||||
p.sourc_id = d.sourc_id;
|
||||
END;
|
||||
$$ language plpgsql;
|
||||
@@ -1,37 +1,233 @@
|
||||
-- Moran's I
|
||||
-- Moran's I Global Measure (public-facing)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
cdb_moran_local (
|
||||
t TEXT,
|
||||
attr TEXT,
|
||||
significance float DEFAULT 0.05,
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_column TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id',
|
||||
w_type TEXT DEFAULT 'knn')
|
||||
RETURNS TABLE (moran FLOAT, quads TEXT, significance FLOAT, ids INT)
|
||||
CDB_AreasOfInterestGlobal(
|
||||
subquery TEXT,
|
||||
column_name TEXT,
|
||||
w_type TEXT DEFAULT 'knn',
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_col TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id')
|
||||
RETURNS TABLE (moran NUMERIC, significance NUMERIC)
|
||||
AS $$
|
||||
plpy.execute('SELECT cdb_crankshaft._cdb_crankshaft_activate_py()')
|
||||
from crankshaft.clustering import moran_local
|
||||
# TODO: use named parameters or a dictionary
|
||||
return moran_local(t, attr, significance, num_ngbrs, permutations, geom_column, id_col, w_type)
|
||||
# TODO: use named parameters or a dictionary
|
||||
return moran(subquery, column_name, w_type, num_ngbrs, permutations, geom_col, id_col)
|
||||
$$ LANGUAGE plpythonu;
|
||||
|
||||
-- Moran's I Local Rate
|
||||
-- Moran's I Local (internal function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
cdb_moran_local_rate(t TEXT,
|
||||
numerator TEXT,
|
||||
denominator TEXT,
|
||||
significance FLOAT DEFAULT 0.05,
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_column TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id',
|
||||
w_type TEXT DEFAULT 'knn')
|
||||
RETURNS TABLE(moran FLOAT, quads TEXT, significance FLOAT, ids INT, y numeric)
|
||||
_CDB_AreasOfInterestLocal(
|
||||
subquery TEXT,
|
||||
column_name TEXT,
|
||||
w_type TEXT,
|
||||
num_ngbrs INT,
|
||||
permutations INT,
|
||||
geom_col TEXT,
|
||||
id_col TEXT)
|
||||
RETURNS TABLE (moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC)
|
||||
AS $$
|
||||
plpy.execute('SELECT cdb_crankshaft._cdb_crankshaft_activate_py()')
|
||||
from crankshaft.clustering import moran_local
|
||||
# TODO: use named parameters or a dictionary
|
||||
return moran_local(subquery, column_name, w_type, num_ngbrs, permutations, geom_col, id_col)
|
||||
$$ LANGUAGE plpythonu;
|
||||
|
||||
-- Moran's I Local (public-facing function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
CDB_AreasOfInterestLocal(
|
||||
subquery TEXT,
|
||||
column_name TEXT,
|
||||
w_type TEXT DEFAULT 'knn',
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_col TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id')
|
||||
RETURNS TABLE (moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC)
|
||||
AS $$
|
||||
|
||||
SELECT moran, quads, significance, rowid, vals
|
||||
FROM cdb_crankshaft._CDB_AreasOfInterestLocal(subquery, column_name, w_type, num_ngbrs, permutations, geom_col, id_col);
|
||||
|
||||
$$ LANGUAGE SQL;
|
||||
|
||||
-- Moran's I only for HH and HL (public-facing function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
CDB_GetSpatialHotspots(
|
||||
subquery TEXT,
|
||||
column_name TEXT,
|
||||
w_type TEXT DEFAULT 'knn',
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_col TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id')
|
||||
RETURNS TABLE (moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC)
|
||||
AS $$
|
||||
|
||||
SELECT moran, quads, significance, rowid, vals
|
||||
FROM cdb_crankshaft._CDB_AreasOfInterestLocal(subquery, column_name, w_type, num_ngbrs, permutations, geom_col, id_col)
|
||||
WHERE quads IN ('HH', 'HL');
|
||||
|
||||
$$ LANGUAGE SQL;
|
||||
|
||||
-- Moran's I only for LL and LH (public-facing function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
CDB_GetSpatialColdspots(
|
||||
subquery TEXT,
|
||||
attr TEXT,
|
||||
w_type TEXT DEFAULT 'knn',
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_col TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id')
|
||||
RETURNS TABLE (moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC)
|
||||
AS $$
|
||||
|
||||
SELECT moran, quads, significance, rowid, vals
|
||||
FROM cdb_crankshaft._CDB_AreasOfInterestLocal(subquery, attr, w_type, num_ngbrs, permutations, geom_col, id_col)
|
||||
WHERE quads IN ('LL', 'LH');
|
||||
|
||||
$$ LANGUAGE SQL;
|
||||
|
||||
-- Moran's I only for LH and HL (public-facing function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
CDB_GetSpatialOutliers(
|
||||
subquery TEXT,
|
||||
attr TEXT,
|
||||
w_type TEXT DEFAULT 'knn',
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_col TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id')
|
||||
RETURNS TABLE (moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC)
|
||||
AS $$
|
||||
|
||||
SELECT moran, quads, significance, rowid, vals
|
||||
FROM cdb_crankshaft._CDB_AreasOfInterestLocal(subquery, attr, w_type, num_ngbrs, permutations, geom_col, id_col)
|
||||
WHERE quads IN ('HL', 'LH');
|
||||
|
||||
$$ LANGUAGE SQL;
|
||||
|
||||
-- Moran's I Global Rate (public-facing function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
CDB_AreasOfInterestGlobalRate(
|
||||
subquery TEXT,
|
||||
numerator TEXT,
|
||||
denominator TEXT,
|
||||
w_type TEXT DEFAULT 'knn',
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_col TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id')
|
||||
RETURNS TABLE (moran FLOAT, significance FLOAT)
|
||||
AS $$
|
||||
plpy.execute('SELECT cdb_crankshaft._cdb_crankshaft_activate_py()')
|
||||
from crankshaft.clustering import moran_local
|
||||
# TODO: use named parameters or a dictionary
|
||||
return moran_rate(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col)
|
||||
$$ LANGUAGE plpythonu;
|
||||
|
||||
|
||||
-- Moran's I Local Rate (internal function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
_CDB_AreasOfInterestLocalRate(
|
||||
subquery TEXT,
|
||||
numerator TEXT,
|
||||
denominator TEXT,
|
||||
w_type TEXT,
|
||||
num_ngbrs INT,
|
||||
permutations INT,
|
||||
geom_col TEXT,
|
||||
id_col TEXT)
|
||||
RETURNS
|
||||
TABLE(moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC)
|
||||
AS $$
|
||||
plpy.execute('SELECT cdb_crankshaft._cdb_crankshaft_activate_py()')
|
||||
from crankshaft.clustering import moran_local_rate
|
||||
# TODO: use named parameters or a dictionary
|
||||
return moran_local_rate(t, numerator, denominator, significance, num_ngbrs, permutations, geom_column, id_col, w_type)
|
||||
# TODO: use named parameters or a dictionary
|
||||
return moran_local_rate(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col)
|
||||
$$ LANGUAGE plpythonu;
|
||||
|
||||
-- Moran's I Local Rate (public-facing function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
CDB_AreasOfInterestLocalRate(
|
||||
subquery TEXT,
|
||||
numerator TEXT,
|
||||
denominator TEXT,
|
||||
w_type TEXT DEFAULT 'knn',
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_col TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id')
|
||||
RETURNS
|
||||
TABLE(moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC)
|
||||
AS $$
|
||||
|
||||
SELECT moran, quads, significance, rowid, vals
|
||||
FROM cdb_crankshaft._CDB_AreasOfInterestLocalRate(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col);
|
||||
|
||||
$$ LANGUAGE SQL;
|
||||
|
||||
-- Moran's I Local Rate only for HH and HL (public-facing function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
CDB_GetSpatialHotspotsRate(
|
||||
subquery TEXT,
|
||||
numerator TEXT,
|
||||
denominator TEXT,
|
||||
w_type TEXT DEFAULT 'knn',
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_col TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id')
|
||||
RETURNS
|
||||
TABLE(moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC)
|
||||
AS $$
|
||||
|
||||
SELECT moran, quads, significance, rowid, vals
|
||||
FROM cdb_crankshaft._CDB_AreasOfInterestLocalRate(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col)
|
||||
WHERE quads IN ('HH', 'HL');
|
||||
|
||||
$$ LANGUAGE SQL;
|
||||
|
||||
-- Moran's I Local Rate only for LL and LH (public-facing function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
CDB_GetSpatialColdspotsRate(
|
||||
subquery TEXT,
|
||||
numerator TEXT,
|
||||
denominator TEXT,
|
||||
w_type TEXT DEFAULT 'knn',
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_col TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id')
|
||||
RETURNS
|
||||
TABLE(moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC)
|
||||
AS $$
|
||||
|
||||
SELECT moran, quads, significance, rowid, vals
|
||||
FROM cdb_crankshaft._CDB_AreasOfInterestLocalRate(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col)
|
||||
WHERE quads IN ('LL', 'LH');
|
||||
|
||||
$$ LANGUAGE SQL;
|
||||
|
||||
-- Moran's I Local Rate only for LH and HL (public-facing function)
|
||||
CREATE OR REPLACE FUNCTION
|
||||
CDB_GetSpatialOutliersRate(
|
||||
subquery TEXT,
|
||||
numerator TEXT,
|
||||
denominator TEXT,
|
||||
w_type TEXT DEFAULT 'knn',
|
||||
num_ngbrs INT DEFAULT 5,
|
||||
permutations INT DEFAULT 99,
|
||||
geom_col TEXT DEFAULT 'the_geom',
|
||||
id_col TEXT DEFAULT 'cartodb_id')
|
||||
RETURNS
|
||||
TABLE(moran NUMERIC, quads TEXT, significance NUMERIC, rowid INT, vals NUMERIC)
|
||||
AS $$
|
||||
|
||||
SELECT moran, quads, significance, rowid, vals
|
||||
FROM cdb_crankshaft._CDB_AreasOfInterestLocalRate(subquery, numerator, denominator, w_type, num_ngbrs, permutations, geom_col, id_col)
|
||||
WHERE quads IN ('HL', 'LH');
|
||||
|
||||
$$ LANGUAGE SQL;
|
||||
|
||||
@@ -1,158 +1,277 @@
|
||||
\pset format unaligned
|
||||
\set ECHO all
|
||||
\i test/fixtures/ppoints.sql
|
||||
-- test table (spanish province centroids with some invented values)
|
||||
CREATE TABLE ppoints (cartodb_id integer, the_geom geometry, the_geom_webmercator geometry, code text, region_code text, value float);
|
||||
INSERT INTO ppoints VALUES
|
||||
( 1,'0101000020E6100000A8306DC0CBC305C051D14B6CE56A4540'::geometry,ST_Transform('0101000020E6100000A8306DC0CBC305C051D14B6CE56A4540'::geometry, 3857),'01','16',0.5),
|
||||
( 4,'0101000020E6100000E220A4362DC202C0FD8AFA5119994240'::geometry,ST_Transform('0101000020E6100000E220A4362DC202C0FD8AFA5119994240'::geometry, 3857),'04','01',0.1),
|
||||
( 5,'0101000020E610000004377E573AC813C0CB5871BB17494440'::geometry,ST_Transform('0101000020E610000004377E573AC813C0CB5871BB17494440'::geometry, 3857),'05','07',0.3),
|
||||
( 2,'0101000020E610000000F49BE19BAFFFBF639958FDA6694340'::geometry,ST_Transform('0101000020E610000000F49BE19BAFFFBF639958FDA6694340'::geometry, 3857),'02','08',0.7),
|
||||
( 3,'0101000020E61000005D0B7E63C832E2BFDB63EB00443D4340'::geometry,ST_Transform('0101000020E61000005D0B7E63C832E2BFDB63EB00443D4340'::geometry, 3857),'03','10',0.2),
|
||||
( 6,'0101000020E61000006F3742B7FB9018C0DD967DC4D95A4340'::geometry,ST_Transform('0101000020E61000006F3742B7FB9018C0DD967DC4D95A4340'::geometry, 3857),'06','11',0.05),
|
||||
( 7,'0101000020E6100000E4BB36995F4C0740EAC0E5CA9FC94340'::geometry,ST_Transform('0101000020E6100000E4BB36995F4C0740EAC0E5CA9FC94340'::geometry, 3857),'07','04',0.4),
|
||||
( 8,'0101000020E61000003D43CC6CAFBEFF3F6B52E66F91DD4440'::geometry,ST_Transform('0101000020E61000003D43CC6CAFBEFF3F6B52E66F91DD4440'::geometry, 3857),'08','09',0.7),
|
||||
( 9,'0101000020E61000003CC797BD99AF0CC0495A87FA312F4540'::geometry,ST_Transform('0101000020E61000003CC797BD99AF0CC0495A87FA312F4540'::geometry, 3857),'09','07',0.5),
|
||||
(13,'0101000020E61000001CAA00A9F19F0EC05DF9267B7A764340'::geometry,ST_Transform('0101000020E61000001CAA00A9F19F0EC05DF9267B7A764340'::geometry, 3857),'13','08',0.4),
|
||||
(16,'0101000020E6100000D8208F3CBC9001C065638DC1B1F24340'::geometry,ST_Transform('0101000020E6100000D8208F3CBC9001C065638DC1B1F24340'::geometry, 3857),'16','08',0.4),
|
||||
(17,'0101000020E6100000E9E6A94A71630540AD7A0CB062104540'::geometry,ST_Transform('0101000020E6100000E9E6A94A71630540AD7A0CB062104540'::geometry, 3857),'17','09',0.6),
|
||||
(18,'0101000020E6100000719792D59E240AC098AC548E00A84240'::geometry,ST_Transform('0101000020E6100000719792D59E240AC098AC548E00A84240'::geometry, 3857),'18','01',0.3),
|
||||
(19,'0101000020E6100000972C878B50FD04C0123C881D1F684440'::geometry,ST_Transform('0101000020E6100000972C878B50FD04C0123C881D1F684440'::geometry, 3857),'19','08',0.7),
|
||||
(21,'0101000020E6100000F7893E9934511BC0EAA4BF03E1C94240'::geometry,ST_Transform('0101000020E6100000F7893E9934511BC0EAA4BF03E1C94240'::geometry, 3857),'21','01',0.1),
|
||||
(22,'0101000020E6100000572C2123B2A8B2BF7ED7FABAFD194540'::geometry,ST_Transform('0101000020E6100000572C2123B2A8B2BF7ED7FABAFD194540'::geometry, 3857),'22','02',0.4),
|
||||
(25,'0101000020E6100000461B67D688C4F03FD990EEC3A0054540'::geometry,ST_Transform('0101000020E6100000461B67D688C4F03FD990EEC3A0054540'::geometry, 3857),'25','09',0.4),
|
||||
(26,'0101000020E6100000A139FB06E82204C0539D84F62E234540'::geometry,ST_Transform('0101000020E6100000A139FB06E82204C0539D84F62E234540'::geometry, 3857),'26','17',0.6),
|
||||
(27,'0101000020E6100000A92E54E618C91DC00D3A947B81814540'::geometry,ST_Transform('0101000020E6100000A92E54E618C91DC00D3A947B81814540'::geometry, 3857),'27','12',0.3),
|
||||
(28,'0101000020E6100000971DC8B682BC0DC016D0E8055F3F4440'::geometry,ST_Transform('0101000020E6100000971DC8B682BC0DC016D0E8055F3F4440'::geometry, 3857),'28','13',0.8),
|
||||
(30,'0101000020E6100000A2DC1964A8C5F7BF19299C994D004340'::geometry,ST_Transform('0101000020E6100000A2DC1964A8C5F7BF19299C994D004340'::geometry, 3857),'30','14',0.1),
|
||||
(31,'0101000020E6100000DCA1FCC87B56FABF9B88E9D866554540'::geometry,ST_Transform('0101000020E6100000DCA1FCC87B56FABF9B88E9D866554540'::geometry, 3857),'31','15',0.9),
|
||||
(32,'0101000020E6100000E1517AFCD15E1EC0A18D8D4825194540'::geometry,ST_Transform('0101000020E6100000E1517AFCD15E1EC0A18D8D4825194540'::geometry, 3857),'32','12',0.3),
|
||||
(33,'0101000020E6100000A7FF33825AF917C0FABE7DFB6BA54540'::geometry,ST_Transform('0101000020E6100000A7FF33825AF917C0FABE7DFB6BA54540'::geometry, 3857),'33','03',0.4),
|
||||
(34,'0101000020E6100000FB4E4EBEB72412C0898E7240982F4540'::geometry,ST_Transform('0101000020E6100000FB4E4EBEB72412C0898E7240982F4540'::geometry, 3857),'34','07',0.3),
|
||||
(35,'0101000020E6100000224682B01B1A2DC011091656CC5C3C40'::geometry,ST_Transform('0101000020E6100000224682B01B1A2DC011091656CC5C3C40'::geometry, 3857),'35','05',0.3),
|
||||
(36,'0101000020E6100000F7C9447110EC20C04C5D4823C7374540'::geometry,ST_Transform('0101000020E6100000F7C9447110EC20C04C5D4823C7374540'::geometry, 3857),'36','12',0.2),
|
||||
(37,'0101000020E610000053D6A26DFB4218C09D58FAE209674440'::geometry,ST_Transform('0101000020E610000053D6A26DFB4218C09D58FAE209674440'::geometry, 3857),'37','07',0.5),
|
||||
(38,'0101000020E6100000B1D1B5FC910431C03C0C89BA03503C40'::geometry,ST_Transform('0101000020E6100000B1D1B5FC910431C03C0C89BA03503C40'::geometry, 3857),'38','05',0.4),
|
||||
(39,'0101000020E610000086E6FEE1BD1E10C00417096748994540'::geometry,ST_Transform('0101000020E610000086E6FEE1BD1E10C00417096748994540'::geometry, 3857),'39','06',0.6),
|
||||
(40,'0101000020E6100000FB51C33F733710C038D01729E4954440'::geometry,ST_Transform('0101000020E6100000FB51C33F733710C038D01729E4954440'::geometry, 3857),'40','07',0.5),
|
||||
(41,'0101000020E6100000912D6FDA28BB16C031321F08C4B74240'::geometry,ST_Transform('0101000020E6100000912D6FDA28BB16C031321F08C4B74240'::geometry, 3857),'41','01',0.4),
|
||||
(42,'0101000020E6100000554432EABEB504C069ECD78775CF4440'::geometry,ST_Transform('0101000020E6100000554432EABEB504C069ECD78775CF4440'::geometry, 3857),'42','07',0.2),
|
||||
(43,'0101000020E6100000157F117C1A2EEA3F027CD1F2368B4440'::geometry,ST_Transform('0101000020E6100000157F117C1A2EEA3F027CD1F2368B4440'::geometry, 3857),'43','09',0.3),
|
||||
(44,'0101000020E610000051AA5B1BD718EABFEE67613BA4544440'::geometry,ST_Transform('0101000020E610000051AA5B1BD718EABFEE67613BA4544440'::geometry, 3857),'44','02',0.2),
|
||||
(45,'0101000020E610000022C5C01BB69710C08563BC1499E54340'::geometry,ST_Transform('0101000020E610000022C5C01BB69710C08563BC1499E54340'::geometry, 3857),'45','08',0.3),
|
||||
(46,'0101000020E6100000D5FCF78A11A0E9BFDEA46F8E64AF4340'::geometry,ST_Transform('0101000020E6100000D5FCF78A11A0E9BFDEA46F8E64AF4340'::geometry, 3857),'46','10',0.2),
|
||||
(47,'0101000020E61000003AE63525866313C02100050B2BD14440'::geometry,ST_Transform('0101000020E61000003AE63525866313C02100050B2BD14440'::geometry, 3857),'47','07',0.3),
|
||||
(48,'0101000020E610000030F187FD1FD206C0C767E1496C9E4540'::geometry,ST_Transform('0101000020E610000030F187FD1FD206C0C767E1496C9E4540'::geometry, 3857),'48','16',0.5),
|
||||
(49,'0101000020E61000009C22867B12EC17C006C5F40C14DD4440'::geometry,ST_Transform('0101000020E61000009C22867B12EC17C006C5F40C14DD4440'::geometry, 3857),'49','07',0.2),
|
||||
(50,'0101000020E6100000F7D5EFC62D08F1BF69D1231D68CF4440'::geometry,ST_Transform('0101000020E6100000F7D5EFC62D08F1BF69D1231D68CF4440'::geometry, 3857),'50','02',0.6),
|
||||
(51,'0101000020E61000005B0E1F8DAA5F15C0530BFE285BF24140'::geometry,ST_Transform('0101000020E61000005B0E1F8DAA5F15C0530BFE285BF24140'::geometry, 3857),'51','18',0.01),
|
||||
(10,'0101000020E61000000FD65D82AEA418C06192D1351FDB4340'::geometry,ST_Transform('0101000020E61000000FD65D82AEA418C06192D1351FDB4340'::geometry, 3857),'10','11',0.04),
|
||||
(11,'0101000020E6100000B305531DAB0A17C0DEAFCD4EE5464240'::geometry,ST_Transform('0101000020E6100000B305531DAB0A17C0DEAFCD4EE5464240'::geometry, 3857),'11','01',0.08),
|
||||
(12,'0101000020E610000059721A7297C9C2BF9EBE383BE51E4440'::geometry,ST_Transform('0101000020E610000059721A7297C9C2BF9EBE383BE51E4440'::geometry, 3857),'12','10',0.2),
|
||||
(14,'0101000020E610000000C86313AF3C13C0E530879C10FF4240'::geometry,ST_Transform('0101000020E610000000C86313AF3C13C0E530879C10FF4240'::geometry, 3857),'14','01',0.2),
|
||||
(15,'0101000020E61000002A475497B6ED20C06643D4131A904540'::geometry,ST_Transform('0101000020E61000002A475497B6ED20C06643D4131A904540'::geometry, 3857),'15','12',0.3),
|
||||
(20,'0101000020E6100000F975566FAD8D01C0E840C33F67924540'::geometry,ST_Transform('0101000020E6100000F975566FAD8D01C0E840C33F67924540'::geometry, 3857),'20','16',0.8),
|
||||
(23,'0101000020E610000025FA13E595880BC022BB07131D024340'::geometry,ST_Transform('0101000020E610000025FA13E595880BC022BB07131D024340'::geometry, 3857),'23','01',0.1),
|
||||
(24,'0101000020E61000009C5F91C5095C17C0C78784B15A4F4540'::geometry,ST_Transform('0101000020E61000009C5F91C5095C17C0C78784B15A4F4540'::geometry, 3857),'24','07',0.3),
|
||||
(29,'0101000020E6100000C34D4A5B48E712C092E680892C684240'::geometry,ST_Transform('0101000020E6100000C34D4A5B48E712C092E680892C684240'::geometry, 3857),'29','01',0.3),
|
||||
(52,'0101000020E6100000406A545EB29A07C04E5F0BDA39A54140'::geometry,ST_Transform('0101000020E6100000406A545EB29A07C04E5F0BDA39A54140'::geometry, 3857),'52','19',0.01)
|
||||
\i test/fixtures/ppoints2.sql
|
||||
-- test table (spanish province centroids with some invented values)
|
||||
CREATE TABLE ppoints2 (cartodb_id integer, the_geom geometry, code text, region_code text, numerator float, denominator float);
|
||||
INSERT INTO ppoints2 VALUES
|
||||
( 1,'0101000020E6100000A8306DC0CBC305C051D14B6CE56A4540'::geometry,'01','16',0.5, 1.0),
|
||||
( 4,'0101000020E6100000E220A4362DC202C0FD8AFA5119994240'::geometry,'04','01',0.1, 1.0),
|
||||
( 5,'0101000020E610000004377E573AC813C0CB5871BB17494440'::geometry,'05','07',0.3, 1.0),
|
||||
( 2,'0101000020E610000000F49BE19BAFFFBF639958FDA6694340'::geometry,'02','08',0.7, 1.0),
|
||||
( 3,'0101000020E61000005D0B7E63C832E2BFDB63EB00443D4340'::geometry,'03','10',0.2, 1.0),
|
||||
( 6,'0101000020E61000006F3742B7FB9018C0DD967DC4D95A4340'::geometry,'06','11',0.05, 1.0),
|
||||
( 7,'0101000020E6100000E4BB36995F4C0740EAC0E5CA9FC94340'::geometry,'07','04',0.4, 1.0),
|
||||
( 8,'0101000020E61000003D43CC6CAFBEFF3F6B52E66F91DD4440'::geometry,'08','09',0.7, 1.0),
|
||||
( 9,'0101000020E61000003CC797BD99AF0CC0495A87FA312F4540'::geometry,'09','07',0.5, 1.0),
|
||||
(13,'0101000020E61000001CAA00A9F19F0EC05DF9267B7A764340'::geometry,'13','08',0.4, 1.0),
|
||||
(16,'0101000020E6100000D8208F3CBC9001C065638DC1B1F24340'::geometry,'16','08',0.4, 1.0),
|
||||
(17,'0101000020E6100000E9E6A94A71630540AD7A0CB062104540'::geometry,'17','09',0.6, 1.0),
|
||||
(18,'0101000020E6100000719792D59E240AC098AC548E00A84240'::geometry,'18','01',0.3, 1.0),
|
||||
(19,'0101000020E6100000972C878B50FD04C0123C881D1F684440'::geometry,'19','08',0.7, 1.0),
|
||||
(21,'0101000020E6100000F7893E9934511BC0EAA4BF03E1C94240'::geometry,'21','01',0.1, 1.0),
|
||||
(22,'0101000020E6100000572C2123B2A8B2BF7ED7FABAFD194540'::geometry,'22','02',0.4, 1.0),
|
||||
(25,'0101000020E6100000461B67D688C4F03FD990EEC3A0054540'::geometry,'25','09',0.4, 1.0),
|
||||
(26,'0101000020E6100000A139FB06E82204C0539D84F62E234540'::geometry,'26','17',0.6, 1.0),
|
||||
(27,'0101000020E6100000A92E54E618C91DC00D3A947B81814540'::geometry,'27','12',0.3, 1.0),
|
||||
(28,'0101000020E6100000971DC8B682BC0DC016D0E8055F3F4440'::geometry,'28','13',0.8, 1.0),
|
||||
(30,'0101000020E6100000A2DC1964A8C5F7BF19299C994D004340'::geometry,'30','14',0.1, 1.0),
|
||||
(31,'0101000020E6100000DCA1FCC87B56FABF9B88E9D866554540'::geometry,'31','15',0.9, 1.0),
|
||||
(32,'0101000020E6100000E1517AFCD15E1EC0A18D8D4825194540'::geometry,'32','12',0.3, 1.0),
|
||||
(33,'0101000020E6100000A7FF33825AF917C0FABE7DFB6BA54540'::geometry,'33','03',0.4, 1.0),
|
||||
(34,'0101000020E6100000FB4E4EBEB72412C0898E7240982F4540'::geometry,'34','07',0.3, 1.0),
|
||||
(35,'0101000020E6100000224682B01B1A2DC011091656CC5C3C40'::geometry,'35','05',0.3, 1.0),
|
||||
(36,'0101000020E6100000F7C9447110EC20C04C5D4823C7374540'::geometry,'36','12',0.2, 1.0),
|
||||
(37,'0101000020E610000053D6A26DFB4218C09D58FAE209674440'::geometry,'37','07',0.5, 1.0),
|
||||
(38,'0101000020E6100000B1D1B5FC910431C03C0C89BA03503C40'::geometry,'38','05',0.4, 1.0),
|
||||
(39,'0101000020E610000086E6FEE1BD1E10C00417096748994540'::geometry,'39','06',0.6, 1.0),
|
||||
(40,'0101000020E6100000FB51C33F733710C038D01729E4954440'::geometry,'40','07',0.5, 1.0),
|
||||
(41,'0101000020E6100000912D6FDA28BB16C031321F08C4B74240'::geometry,'41','01',0.4, 1.0),
|
||||
(42,'0101000020E6100000554432EABEB504C069ECD78775CF4440'::geometry,'42','07',0.2, 1.0),
|
||||
(43,'0101000020E6100000157F117C1A2EEA3F027CD1F2368B4440'::geometry,'43','09',0.3, 1.0),
|
||||
(44,'0101000020E610000051AA5B1BD718EABFEE67613BA4544440'::geometry,'44','02',0.2, 1.0),
|
||||
(45,'0101000020E610000022C5C01BB69710C08563BC1499E54340'::geometry,'45','08',0.3, 1.0),
|
||||
(46,'0101000020E6100000D5FCF78A11A0E9BFDEA46F8E64AF4340'::geometry,'46','10',0.2, 1.0),
|
||||
(47,'0101000020E61000003AE63525866313C02100050B2BD14440'::geometry,'47','07',0.3, 1.0),
|
||||
(48,'0101000020E610000030F187FD1FD206C0C767E1496C9E4540'::geometry,'48','16',0.5, 1.0),
|
||||
(49,'0101000020E61000009C22867B12EC17C006C5F40C14DD4440'::geometry,'49','07',0.2, 1.0),
|
||||
(50,'0101000020E6100000F7D5EFC62D08F1BF69D1231D68CF4440'::geometry,'50','02',0.6, 1.0),
|
||||
(51,'0101000020E61000005B0E1F8DAA5F15C0530BFE285BF24140'::geometry,'51','18',0.01, 1.0),
|
||||
(10,'0101000020E61000000FD65D82AEA418C06192D1351FDB4340'::geometry,'10','11',0.04, 1.0),
|
||||
(11,'0101000020E6100000B305531DAB0A17C0DEAFCD4EE5464240'::geometry,'11','01',0.08, 1.0),
|
||||
(12,'0101000020E610000059721A7297C9C2BF9EBE383BE51E4440'::geometry,'12','10',0.2, 1.0),
|
||||
(14,'0101000020E610000000C86313AF3C13C0E530879C10FF4240'::geometry,'14','01',0.2, 1.0),
|
||||
(15,'0101000020E61000002A475497B6ED20C06643D4131A904540'::geometry,'15','12',0.3, 1.0),
|
||||
(20,'0101000020E6100000F975566FAD8D01C0E840C33F67924540'::geometry,'20','16',0.8, 1.0),
|
||||
(23,'0101000020E610000025FA13E595880BC022BB07131D024340'::geometry,'23','01',0.1, 1.0),
|
||||
(24,'0101000020E61000009C5F91C5095C17C0C78784B15A4F4540'::geometry,'24','07',0.3, 1.0),
|
||||
(29,'0101000020E6100000C34D4A5B48E712C092E680892C684240'::geometry,'29','01',0.3, 1.0),
|
||||
(52,'0101000020E6100000406A545EB29A07C04E5F0BDA39A54140'::geometry,'52','19',0.0, 1.01)
|
||||
-- Moral functions perform some nondeterministic computations
|
||||
-- (to estimate the significance); we will set the seeds for the RNGs
|
||||
-- that affect those results to have repeateble results
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
_cdb_random_seeds
|
||||
-------------------
|
||||
|
||||
SET client_min_messages TO WARNING;
|
||||
\set ECHO none
|
||||
_cdb_random_seeds
|
||||
|
||||
(1 row)
|
||||
code|quads
|
||||
01|HH
|
||||
02|HL
|
||||
03|LL
|
||||
04|LL
|
||||
05|LH
|
||||
06|LL
|
||||
07|HH
|
||||
08|HH
|
||||
09|HH
|
||||
10|LL
|
||||
11|LL
|
||||
12|LL
|
||||
13|HL
|
||||
14|LL
|
||||
15|LL
|
||||
16|HH
|
||||
17|HH
|
||||
18|LL
|
||||
19|HH
|
||||
20|HH
|
||||
21|LL
|
||||
22|HH
|
||||
23|LL
|
||||
24|LL
|
||||
25|HH
|
||||
26|HH
|
||||
27|LL
|
||||
28|HH
|
||||
29|LL
|
||||
30|LL
|
||||
31|HH
|
||||
32|LL
|
||||
33|HL
|
||||
34|LH
|
||||
35|LL
|
||||
36|LL
|
||||
37|HL
|
||||
38|HL
|
||||
39|HH
|
||||
40|HH
|
||||
41|HL
|
||||
42|LH
|
||||
43|LH
|
||||
44|LL
|
||||
45|LH
|
||||
46|LL
|
||||
47|LL
|
||||
48|HH
|
||||
49|LH
|
||||
50|HH
|
||||
51|LL
|
||||
52|LL
|
||||
(52 rows)
|
||||
_cdb_random_seeds
|
||||
|
||||
SELECT ppoints.code, m.quads
|
||||
FROM ppoints
|
||||
JOIN cdb_crankshaft.cdb_moran_local('SELECT * FROM ppoints', 'value') m
|
||||
ON ppoints.cartodb_id = m.ids
|
||||
ORDER BY ppoints.code;
|
||||
NOTICE: ** Constructing query
|
||||
CONTEXT: PL/Python function "cdb_moran_local"
|
||||
NOTICE: ** Query failed: "SELECT i."cartodb_id" As id, i."value"::numeric As attr1, (SELECT ARRAY(SELECT j."cartodb_id" FROM "(SELECT * FROM ppoints)" As j WHERE j."value" IS NOT NULL ORDER BY j."the_geom" <-> i."the_geom" ASC LIMIT 5 OFFSET 1 ) ) As neighbors FROM "(SELECT * FROM ppoints)" As i WHERE i."value" IS NOT NULL ORDER BY i."cartodb_id" ASC;"
|
||||
CONTEXT: PL/Python function "cdb_moran_local"
|
||||
NOTICE: ** Exiting function
|
||||
CONTEXT: PL/Python function "cdb_moran_local"
|
||||
code | quads
|
||||
------+-------
|
||||
(0 rows)
|
||||
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
_cdb_random_seeds
|
||||
-------------------
|
||||
|
||||
(1 row)
|
||||
code|quads
|
||||
01|HH
|
||||
02|HL
|
||||
07|HH
|
||||
08|HH
|
||||
09|HH
|
||||
13|HL
|
||||
16|HH
|
||||
17|HH
|
||||
19|HH
|
||||
20|HH
|
||||
22|HH
|
||||
25|HH
|
||||
26|HH
|
||||
28|HH
|
||||
31|HH
|
||||
33|HL
|
||||
37|HL
|
||||
38|HL
|
||||
39|HH
|
||||
40|HH
|
||||
41|HL
|
||||
48|HH
|
||||
50|HH
|
||||
(23 rows)
|
||||
_cdb_random_seeds
|
||||
|
||||
SELECT ppoints2.code, m.quads
|
||||
FROM ppoints2
|
||||
JOIN cdb_crankshaft.cdb_moran_local_rate('SELECT * FROM ppoints2', 'numerator', 'denominator') m
|
||||
ON ppoints2.cartodb_id = m.ids
|
||||
ORDER BY ppoints2.code;
|
||||
NOTICE: ** Constructing query
|
||||
CONTEXT: PL/Python function "cdb_moran_local_rate"
|
||||
NOTICE: ** Query failed: "SELECT i."cartodb_id" As id, i."denominator"::numeric As attr1, i."numerator"::numeric As attr2, (SELECT ARRAY(SELECT j."cartodb_id" FROM "(SELECT * FROM ppoints2)" As j WHERE j."denominator" IS NOT NULL AND j."numerator" IS NOT NULL AND j."numerator" <> 0 ORDER BY j."the_geom" <-> i."the_geom" ASC LIMIT 5 OFFSET 1 ) ) As neighbors FROM "(SELECT * FROM ppoints2)" As i WHERE i."denominator" IS NOT NULL AND i."numerator" IS NOT NULL AND i."numerator" <> 0 ORDER BY i."cartodb_id" ASC;"
|
||||
CONTEXT: PL/Python function "cdb_moran_local_rate"
|
||||
NOTICE: ** Error: <class 'plpy.SPIError'>
|
||||
CONTEXT: PL/Python function "cdb_moran_local_rate"
|
||||
NOTICE: ** Exiting function
|
||||
CONTEXT: PL/Python function "cdb_moran_local_rate"
|
||||
ERROR: length of returned sequence did not match number of columns in row
|
||||
CONTEXT: while creating return value
|
||||
PL/Python function "cdb_moran_local_rate"
|
||||
(1 row)
|
||||
code|quads
|
||||
03|LL
|
||||
04|LL
|
||||
05|LH
|
||||
06|LL
|
||||
10|LL
|
||||
11|LL
|
||||
12|LL
|
||||
14|LL
|
||||
15|LL
|
||||
18|LL
|
||||
21|LL
|
||||
23|LL
|
||||
24|LL
|
||||
27|LL
|
||||
29|LL
|
||||
30|LL
|
||||
32|LL
|
||||
34|LH
|
||||
35|LL
|
||||
36|LL
|
||||
42|LH
|
||||
43|LH
|
||||
44|LL
|
||||
45|LH
|
||||
46|LL
|
||||
47|LL
|
||||
49|LH
|
||||
51|LL
|
||||
52|LL
|
||||
(29 rows)
|
||||
_cdb_random_seeds
|
||||
|
||||
(1 row)
|
||||
code|quads
|
||||
02|HL
|
||||
05|LH
|
||||
13|HL
|
||||
33|HL
|
||||
34|LH
|
||||
37|HL
|
||||
38|HL
|
||||
41|HL
|
||||
42|LH
|
||||
43|LH
|
||||
45|LH
|
||||
49|LH
|
||||
(12 rows)
|
||||
_cdb_random_seeds
|
||||
|
||||
(1 row)
|
||||
code|quads
|
||||
01|LL
|
||||
02|LH
|
||||
03|HH
|
||||
04|HH
|
||||
05|LL
|
||||
06|HH
|
||||
07|LL
|
||||
08|LL
|
||||
09|LL
|
||||
10|HH
|
||||
11|HH
|
||||
12|HL
|
||||
13|LL
|
||||
14|HH
|
||||
15|LL
|
||||
16|LL
|
||||
17|LL
|
||||
18|LH
|
||||
19|LL
|
||||
20|LL
|
||||
21|HH
|
||||
22|LL
|
||||
23|HL
|
||||
24|LL
|
||||
25|LL
|
||||
26|LL
|
||||
27|LL
|
||||
28|LL
|
||||
29|LH
|
||||
30|HH
|
||||
31|LL
|
||||
32|LL
|
||||
33|LL
|
||||
34|LL
|
||||
35|LH
|
||||
36|HL
|
||||
37|LH
|
||||
38|LH
|
||||
39|LL
|
||||
40|LL
|
||||
41|LH
|
||||
42|HL
|
||||
43|LL
|
||||
44|HL
|
||||
45|LL
|
||||
46|HL
|
||||
47|LL
|
||||
48|LL
|
||||
49|HL
|
||||
50|LL
|
||||
51|HH
|
||||
(51 rows)
|
||||
_cdb_random_seeds
|
||||
|
||||
(1 row)
|
||||
code|quads
|
||||
03|HH
|
||||
04|HH
|
||||
06|HH
|
||||
10|HH
|
||||
11|HH
|
||||
12|HL
|
||||
14|HH
|
||||
21|HH
|
||||
23|HL
|
||||
30|HH
|
||||
36|HL
|
||||
42|HL
|
||||
44|HL
|
||||
46|HL
|
||||
49|HL
|
||||
51|HH
|
||||
(16 rows)
|
||||
_cdb_random_seeds
|
||||
|
||||
(1 row)
|
||||
code|quads
|
||||
01|LL
|
||||
02|LH
|
||||
05|LL
|
||||
07|LL
|
||||
08|LL
|
||||
09|LL
|
||||
13|LL
|
||||
15|LL
|
||||
16|LL
|
||||
17|LL
|
||||
18|LH
|
||||
19|LL
|
||||
20|LL
|
||||
22|LL
|
||||
24|LL
|
||||
25|LL
|
||||
26|LL
|
||||
27|LL
|
||||
28|LL
|
||||
29|LH
|
||||
31|LL
|
||||
32|LL
|
||||
33|LL
|
||||
34|LL
|
||||
35|LH
|
||||
37|LH
|
||||
38|LH
|
||||
39|LL
|
||||
40|LL
|
||||
41|LH
|
||||
43|LL
|
||||
45|LL
|
||||
47|LL
|
||||
48|LL
|
||||
50|LL
|
||||
(35 rows)
|
||||
_cdb_random_seeds
|
||||
|
||||
(1 row)
|
||||
code|quads
|
||||
02|LH
|
||||
12|HL
|
||||
18|LH
|
||||
23|HL
|
||||
29|LH
|
||||
35|LH
|
||||
36|HL
|
||||
37|LH
|
||||
38|LH
|
||||
41|LH
|
||||
42|HL
|
||||
44|HL
|
||||
46|HL
|
||||
49|HL
|
||||
(14 rows)
|
||||
|
||||
@@ -1,21 +1,11 @@
|
||||
\i test/fixtures/polyg_values.sql
|
||||
CREATE TABLE values (cartodb_id integer, value float, the_geom geometry);
|
||||
INSERT INTO values(cartodb_id, value, the_geom) VALUES
|
||||
(1,10,'0106000020E61000000100000001030000000100000005000000E5AF3500C03608C08068629111374440C7BC0A00C00F02C0AC0551523B414440C7BC0A00C0A700C0CAF23B6E74FB4340A7267FFFFF5206C0FBB7E41B7EE74340E5AF3500C03608C08068629111374440'::geometry),
|
||||
(2,20,'0106000020E610000001000000010300000001000000050000002439EC00804AF7BF07D6CCB5C3064440C7BC0A00C0A700C0CAF23B6E74FB4340C7BC0A00C00F02C0AC0551523B414440E20CD5FFFF30FABFBE4F76AFEA4B44402439EC00804AF7BF07D6CCB5C3064440'::geometry)
|
||||
SELECT round(cdb_crankshaft.cdb_overlap_sum(
|
||||
'0106000020E61000000100000001030000000100000004000000FFFFFFFFFF3604C09A0B9ECEC42E444000000000C060FBBF30C7FD70E01D44400000000040AD02C06481F1C8CD034440FFFFFFFFFF3604C09A0B9ECEC42E4440'::geometry,
|
||||
'values', 'value'
|
||||
), 2);
|
||||
SET client_min_messages TO WARNING;
|
||||
\set ECHO none
|
||||
round
|
||||
-------
|
||||
4.42
|
||||
(1 row)
|
||||
|
||||
SELECT round(cdb_crankshaft.cdb_overlap_sum(
|
||||
'0106000020E61000000100000001030000000100000004000000FFFFFFFFFF3604C09A0B9ECEC42E444000000000C060FBBF30C7FD70E01D44400000000040AD02C06481F1C8CD034440FFFFFFFFFF3604C09A0B9ECEC42E4440'::geometry,
|
||||
'values', 'value', schema_name := 'public'
|
||||
), 2);
|
||||
round
|
||||
-------
|
||||
4.42
|
||||
|
||||
11
src/pg/test/expected/07_gravity_test.out
Normal file
11
src/pg/test/expected/07_gravity_test.out
Normal file
@@ -0,0 +1,11 @@
|
||||
the_geom | h | hpop | dist
|
||||
--------------------------------------------+-------------------------+--------------------------+----------------
|
||||
01010000001361C3D32B650140DD24068195B34440 | 1.51078258369747945249 | 12.08626066957983561994 | 4964.714459152
|
||||
01010000002497FF907EFB0040713D0AD7A3B04440 | 98.29730954183620807430 | 688.08116679285345652007 | 99.955141922
|
||||
0101000000A167B3EA733501401D5A643BDFAF4440 | 63.70532894711274639196 | 382.23197368267647835174 | 2488.330566505
|
||||
010100000062A1D634EF380140BE9F1A2FDDB44440 | 35.35415870080995954879 | 176.77079350404979774397 | 4359.370460594
|
||||
010100000052B81E85EB510140355EBA490CB24440 | 33.12290506987740864904 | 132.49162027950963459615 | 3703.664449828
|
||||
0101000000C286A757CA320140736891ED7CAF4440 | 65.45251754279248087849 | 196.35755262837744263547 | 2512.092358644
|
||||
01010000007DD0B359F5390140C976BE9F1AAF4440 | 62.83927792471345639225 | 125.67855584942691278449 | 2926.25725244
|
||||
0101000000D237691A140D01407E6FD39FFDB44440 | 53.54905726651871279586 | 53.54905726651871279586 | 3744.515577777
|
||||
(8 rows)
|
||||
2
src/pg/test/fixtures/polyg_values.sql
vendored
2
src/pg/test/fixtures/polyg_values.sql
vendored
@@ -1,3 +1,5 @@
|
||||
SET client_min_messages TO WARNING;
|
||||
\set ECHO none
|
||||
CREATE TABLE values (cartodb_id integer, value float, the_geom geometry);
|
||||
INSERT INTO values(cartodb_id, value, the_geom) VALUES
|
||||
(1,10,'0106000020E61000000100000001030000000100000005000000E5AF3500C03608C08068629111374440C7BC0A00C00F02C0AC0551523B414440C7BC0A00C0A700C0CAF23B6E74FB4340A7267FFFFF5206C0FBB7E41B7EE74340E5AF3500C03608C08068629111374440'::geometry),
|
||||
|
||||
2
src/pg/test/fixtures/ppoints.sql
vendored
2
src/pg/test/fixtures/ppoints.sql
vendored
@@ -1,3 +1,5 @@
|
||||
SET client_min_messages TO WARNING;
|
||||
\set ECHO none
|
||||
-- test table (spanish province centroids with some invented values)
|
||||
CREATE TABLE ppoints (cartodb_id integer, the_geom geometry, the_geom_webmercator geometry, code text, region_code text, value float);
|
||||
INSERT INTO ppoints VALUES
|
||||
|
||||
2
src/pg/test/fixtures/ppoints2.sql
vendored
2
src/pg/test/fixtures/ppoints2.sql
vendored
@@ -1,3 +1,5 @@
|
||||
SET client_min_messages TO WARNING;
|
||||
\set ECHO none
|
||||
-- test table (spanish province centroids with some invented values)
|
||||
CREATE TABLE ppoints2 (cartodb_id integer, the_geom geometry, code text, region_code text, numerator float, denominator float);
|
||||
INSERT INTO ppoints2 VALUES
|
||||
|
||||
@@ -1,21 +1,79 @@
|
||||
\pset format unaligned
|
||||
\set ECHO all
|
||||
\i test/fixtures/ppoints.sql
|
||||
\i test/fixtures/ppoints2.sql
|
||||
|
||||
-- Moral functions perform some nondeterministic computations
|
||||
-- Areas of Interest functions perform some nondeterministic computations
|
||||
-- (to estimate the significance); we will set the seeds for the RNGs
|
||||
-- that affect those results to have repeateble results
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
|
||||
SELECT ppoints.code, m.quads
|
||||
FROM ppoints
|
||||
JOIN cdb_crankshaft.cdb_moran_local('SELECT * FROM ppoints', 'value') m
|
||||
ON ppoints.cartodb_id = m.ids
|
||||
JOIN cdb_crankshaft.CDB_AreasOfInterestLocal('SELECT * FROM ppoints', 'value') m
|
||||
ON ppoints.cartodb_id = m.rowid
|
||||
ORDER BY ppoints.code;
|
||||
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
|
||||
-- Spatial Hotspots
|
||||
SELECT ppoints.code, m.quads
|
||||
FROM ppoints
|
||||
JOIN cdb_crankshaft.CDB_GetSpatialHotspots('SELECT * FROM ppoints', 'value') m
|
||||
ON ppoints.cartodb_id = m.rowid
|
||||
ORDER BY ppoints.code;
|
||||
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
|
||||
-- Spatial Coldspots
|
||||
SELECT ppoints.code, m.quads
|
||||
FROM ppoints
|
||||
JOIN cdb_crankshaft.CDB_GetSpatialColdspots('SELECT * FROM ppoints', 'value') m
|
||||
ON ppoints.cartodb_id = m.rowid
|
||||
ORDER BY ppoints.code;
|
||||
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
|
||||
-- Spatial Outliers
|
||||
SELECT ppoints.code, m.quads
|
||||
FROM ppoints
|
||||
JOIN cdb_crankshaft.CDB_GetSpatialOutliers('SELECT * FROM ppoints', 'value') m
|
||||
ON ppoints.cartodb_id = m.rowid
|
||||
ORDER BY ppoints.code;
|
||||
|
||||
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
|
||||
-- Areas of Interest (rate)
|
||||
SELECT ppoints2.code, m.quads
|
||||
FROM ppoints2
|
||||
JOIN cdb_crankshaft.cdb_moran_local_rate('SELECT * FROM ppoints2', 'numerator', 'denominator') m
|
||||
ON ppoints2.cartodb_id = m.ids
|
||||
JOIN cdb_crankshaft.CDB_AreasOfInterestLocalRate('SELECT * FROM ppoints2', 'numerator', 'denominator') m
|
||||
ON ppoints2.cartodb_id = m.rowid
|
||||
ORDER BY ppoints2.code;
|
||||
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
|
||||
-- Spatial Hotspots (rate)
|
||||
SELECT ppoints2.code, m.quads
|
||||
FROM ppoints2
|
||||
JOIN cdb_crankshaft.CDB_GetSpatialHotspotsRate('SELECT * FROM ppoints2', 'numerator', 'denominator') m
|
||||
ON ppoints2.cartodb_id = m.rowid
|
||||
ORDER BY ppoints2.code;
|
||||
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
|
||||
-- Spatial Coldspots (rate)
|
||||
SELECT ppoints2.code, m.quads
|
||||
FROM ppoints2
|
||||
JOIN cdb_crankshaft.CDB_GetSpatialColdspotsRate('SELECT * FROM ppoints2', 'numerator', 'denominator') m
|
||||
ON ppoints2.cartodb_id = m.rowid
|
||||
ORDER BY ppoints2.code;
|
||||
|
||||
SELECT cdb_crankshaft._cdb_random_seeds(1234);
|
||||
|
||||
-- Spatial Outliers (rate)
|
||||
SELECT ppoints2.code, m.quads
|
||||
FROM ppoints2
|
||||
JOIN cdb_crankshaft.CDB_GetSpatialOutliersRate('SELECT * FROM ppoints2', 'numerator', 'denominator') m
|
||||
ON ppoints2.cartodb_id = m.rowid
|
||||
ORDER BY ppoints2.code;
|
||||
|
||||
21
src/pg/test/sql/07_gravity_test.sql
Normal file
21
src/pg/test/sql/07_gravity_test.sql
Normal file
@@ -0,0 +1,21 @@
|
||||
WITH t AS (
|
||||
SELECT
|
||||
ARRAY[1,2,3] AS id,
|
||||
ARRAY[7.0,8.0,3.0] AS w,
|
||||
ARRAY[ST_GeomFromText('POINT(2.1744 41.4036)'),ST_GeomFromText('POINT(2.1228 41.3809)'),ST_GeomFromText('POINT(2.1511 41.3742)')] AS g
|
||||
),
|
||||
s AS (
|
||||
SELECT
|
||||
ARRAY[10,20,30,40,50,60,70,80] AS id,
|
||||
ARRAY[800, 700, 600, 500, 400, 300, 200, 100] AS p,
|
||||
ARRAY[ST_GeomFromText('POINT(2.1744 41.403)'),ST_GeomFromText('POINT(2.1228 41.380)'),ST_GeomFromText('POINT(2.1511 41.374)'),ST_GeomFromText('POINT(2.1528 41.413)'),ST_GeomFromText('POINT(2.165 41.391)'),ST_GeomFromText('POINT(2.1498 41.371)'),ST_GeomFromText('POINT(2.1533 41.368)'),ST_GeomFromText('POINT(2.131386 41.41399)')] AS g
|
||||
)
|
||||
SELECT
|
||||
g.the_geom,
|
||||
g.h,
|
||||
g.hpop,
|
||||
g.dist
|
||||
FROM
|
||||
t,
|
||||
s,
|
||||
CDB_Gravity(t.id, t.g, t.w, s.id, s.g, s.p, 2, 100000, 3) g;
|
||||
@@ -9,7 +9,7 @@ SET search_path TO public,cartodb,cdb_crankshaft;
|
||||
-- Exercise public functions
|
||||
SELECT ppoints.code, m.quads
|
||||
FROM ppoints
|
||||
JOIN cdb_moran_local('ppoints', 'value') m
|
||||
JOIN CDB_AreasOfInterest_Local('ppoints', 'value') m
|
||||
ON ppoints.cartodb_id = m.ids
|
||||
ORDER BY ppoints.code;
|
||||
SELECT round(cdb_overlap_sum(
|
||||
|
||||
@@ -8,7 +8,7 @@ cd crankshaft
|
||||
nosetests test/
|
||||
```
|
||||
|
||||
## Notes about python dependencies
|
||||
## Notes about Python dependencies
|
||||
* This extension is targeted at production databases. Therefore certain restrictions must be assumed about the production environment vs other experimental environments.
|
||||
* We're using `pip` and `virtualenv` to generate a suitable isolated environment for python code that has all the dependencies
|
||||
* Every dependency should be:
|
||||
|
||||
@@ -5,143 +5,226 @@ Moran's I geostatistics (global clustering & outliers presence)
|
||||
# TODO: Fill in local neighbors which have null/NoneType values with the
|
||||
# average of the their neighborhood
|
||||
|
||||
import numpy as np
|
||||
import pysal as ps
|
||||
import plpy
|
||||
|
||||
# crankshaft module
|
||||
import crankshaft.pysal_utils as pu
|
||||
|
||||
# High level interface ---------------------------------------
|
||||
|
||||
def moran_local(subquery, attr, significance, num_ngbrs, permutations, geom_column, id_col, w_type):
|
||||
def moran(subquery, attr_name,
|
||||
w_type, num_ngbrs, permutations, geom_col, id_col):
|
||||
"""
|
||||
Moran's I (global)
|
||||
Implementation building neighbors with a PostGIS database and Moran's I
|
||||
core clusters with PySAL.
|
||||
Andy Eschbacher
|
||||
"""
|
||||
qvals = {"id_col": id_col,
|
||||
"attr1": attr_name,
|
||||
"geom_col": geom_col,
|
||||
"subquery": subquery,
|
||||
"num_ngbrs": num_ngbrs}
|
||||
|
||||
query = pu.construct_neighbor_query(w_type, qvals)
|
||||
|
||||
plpy.notice('** Query: %s' % query)
|
||||
|
||||
try:
|
||||
result = plpy.execute(query)
|
||||
# if there are no neighbors, exit
|
||||
if len(result) == 0:
|
||||
return pu.empty_zipped_array(2)
|
||||
plpy.notice('** Query returned with %d rows' % len(result))
|
||||
except plpy.SPIError:
|
||||
plpy.error('Error: areas of interest query failed, check input parameters')
|
||||
plpy.notice('** Query failed: "%s"' % query)
|
||||
plpy.notice('** Error: %s' % plpy.SPIError)
|
||||
return pu.empty_zipped_array(2)
|
||||
|
||||
## collect attributes
|
||||
attr_vals = pu.get_attributes(result)
|
||||
|
||||
## calculate weights
|
||||
weight = pu.get_weight(result, w_type, num_ngbrs)
|
||||
|
||||
## calculate moran global
|
||||
moran_global = ps.esda.moran.Moran(attr_vals, weight,
|
||||
permutations=permutations)
|
||||
|
||||
return zip([moran_global.I], [moran_global.EI])
|
||||
|
||||
def moran_local(subquery, attr,
|
||||
w_type, num_ngbrs, permutations, geom_col, id_col):
|
||||
"""
|
||||
Moran's I implementation for PL/Python
|
||||
Andy Eschbacher
|
||||
"""
|
||||
# TODO: ensure that the significance output can be smaller that 1e-3 (0.001)
|
||||
# TODO: make a wishlist of output features (zscores, pvalues, raw local lisa, what else?)
|
||||
|
||||
plpy.notice('** Constructing query')
|
||||
|
||||
# geometries with attributes that are null are ignored
|
||||
# resulting in a collection of not as near neighbors
|
||||
|
||||
qvals = {"id_col": id_col,
|
||||
"attr1": attr,
|
||||
"geom_col": geom_column,
|
||||
"attr1": attr,
|
||||
"geom_col": geom_col,
|
||||
"subquery": subquery,
|
||||
"num_ngbrs": num_ngbrs}
|
||||
|
||||
q = get_query(w_type, qvals)
|
||||
query = pu.construct_neighbor_query(w_type, qvals)
|
||||
|
||||
try:
|
||||
r = plpy.execute(q)
|
||||
plpy.notice('** Query returned with %d rows' % len(r))
|
||||
result = plpy.execute(query)
|
||||
# if there are no neighbors, exit
|
||||
if len(result) == 0:
|
||||
return pu.empty_zipped_array(5)
|
||||
except plpy.SPIError:
|
||||
plpy.notice('** Query failed: "%s"' % q)
|
||||
plpy.notice('** Exiting function')
|
||||
return zip([None], [None], [None], [None])
|
||||
plpy.error('Error: areas of interest query failed, check input parameters')
|
||||
plpy.notice('** Query failed: "%s"' % query)
|
||||
return pu.empty_zipped_array(5)
|
||||
|
||||
y = get_attributes(r, 1)
|
||||
w = get_weight(r, w_type)
|
||||
attr_vals = pu.get_attributes(result)
|
||||
weight = pu.get_weight(result, w_type, num_ngbrs)
|
||||
|
||||
# calculate LISA values
|
||||
lisa = ps.Moran_Local(y, w)
|
||||
lisa = ps.esda.moran.Moran_Local(attr_vals, weight,
|
||||
permutations=permutations)
|
||||
|
||||
# find units of significance
|
||||
lisa_sig = lisa_sig_vals(lisa.p_sim, lisa.q, significance)
|
||||
# find quadrants for each geometry
|
||||
quads = quad_position(lisa.q)
|
||||
|
||||
plpy.notice('** Finished calculations')
|
||||
return zip(lisa.Is, quads, lisa.p_sim, weight.id_order, lisa.y)
|
||||
|
||||
return zip(lisa.Is, lisa_sig, lisa.p_sim, w.id_order)
|
||||
|
||||
|
||||
def moran_local_rate(subquery, numerator, denominator, significance, num_ngbrs, permutations, geom_column, id_col, w_type):
|
||||
def moran_rate(subquery, numerator, denominator,
|
||||
w_type, num_ngbrs, permutations, geom_col, id_col):
|
||||
"""
|
||||
Moran's I Local Rate
|
||||
Moran's I Rate (global)
|
||||
Andy Eschbacher
|
||||
"""
|
||||
|
||||
plpy.notice('** Constructing query')
|
||||
|
||||
# geometries with attributes that are null are ignored
|
||||
# resulting in a collection of not as near neighbors
|
||||
|
||||
qvals = {"id_col": id_col,
|
||||
"numerator": numerator,
|
||||
"denominator": denominator,
|
||||
"geom_col": geom_column,
|
||||
"attr1": numerator,
|
||||
"attr2": denominator,
|
||||
"geom_col": geom_col,
|
||||
"subquery": subquery,
|
||||
"num_ngbrs": num_ngbrs}
|
||||
|
||||
q = get_query(w_type, qvals)
|
||||
query = pu.construct_neighbor_query(w_type, qvals)
|
||||
|
||||
plpy.notice('** Query: %s' % query)
|
||||
|
||||
try:
|
||||
r = plpy.execute(q)
|
||||
plpy.notice('** Query returned with %d rows' % len(r))
|
||||
result = plpy.execute(query)
|
||||
# if there are no neighbors, exit
|
||||
if len(result) == 0:
|
||||
return pu.empty_zipped_array(2)
|
||||
plpy.notice('** Query returned with %d rows' % len(result))
|
||||
except plpy.SPIError:
|
||||
plpy.notice('** Query failed: "%s"' % q)
|
||||
plpy.error('Error: areas of interest query failed, check input parameters')
|
||||
plpy.notice('** Query failed: "%s"' % query)
|
||||
plpy.notice('** Error: %s' % plpy.SPIError)
|
||||
plpy.notice('** Exiting function')
|
||||
return zip([None], [None], [None], [None])
|
||||
|
||||
plpy.notice('r.nrows() = %d' % r.nrows())
|
||||
return pu.empty_zipped_array(2)
|
||||
|
||||
## collect attributes
|
||||
numer = get_attributes(r, 1)
|
||||
denom = get_attributes(r, 2)
|
||||
numer = pu.get_attributes(result, 1)
|
||||
denom = pu.get_attributes(result, 2)
|
||||
|
||||
w = get_weight(r, w_type, num_ngbrs)
|
||||
weight = pu.get_weight(result, w_type, num_ngbrs)
|
||||
|
||||
## calculate moran global rate
|
||||
lisa_rate = ps.esda.moran.Moran_Rate(numer, denom, weight,
|
||||
permutations=permutations)
|
||||
|
||||
return zip([lisa_rate.I], [lisa_rate.EI])
|
||||
|
||||
def moran_local_rate(subquery, numerator, denominator,
|
||||
w_type, num_ngbrs, permutations, geom_col, id_col):
|
||||
"""
|
||||
Moran's I Local Rate
|
||||
Andy Eschbacher
|
||||
"""
|
||||
# geometries with values that are null are ignored
|
||||
# resulting in a collection of not as near neighbors
|
||||
|
||||
query = pu.construct_neighbor_query(w_type,
|
||||
{"id_col": id_col,
|
||||
"numerator": numerator,
|
||||
"denominator": denominator,
|
||||
"geom_col": geom_col,
|
||||
"subquery": subquery,
|
||||
"num_ngbrs": num_ngbrs})
|
||||
|
||||
try:
|
||||
result = plpy.execute(query)
|
||||
# if there are no neighbors, exit
|
||||
if len(result) == 0:
|
||||
return pu.empty_zipped_array(5)
|
||||
except plpy.SPIError:
|
||||
plpy.error('Error: areas of interest query failed, check input parameters')
|
||||
plpy.notice('** Query failed: "%s"' % query)
|
||||
plpy.notice('** Error: %s' % plpy.SPIError)
|
||||
return pu.empty_zipped_array(5)
|
||||
|
||||
## collect attributes
|
||||
numer = pu.get_attributes(result, 1)
|
||||
denom = pu.get_attributes(result, 2)
|
||||
|
||||
weight = pu.get_weight(result, w_type, num_ngbrs)
|
||||
|
||||
# calculate LISA values
|
||||
lisa = ps.esda.moran.Moran_Local_Rate(numer, denom, w, permutations=permutations)
|
||||
lisa = ps.esda.moran.Moran_Local_Rate(numer, denom, weight,
|
||||
permutations=permutations)
|
||||
|
||||
# find units of significance
|
||||
lisa_sig = lisa_sig_vals(lisa.p_sim, lisa.q, significance)
|
||||
quads = quad_position(lisa.q)
|
||||
|
||||
plpy.notice('** Finished calculations')
|
||||
return zip(lisa.Is, quads, lisa.p_sim, weight.id_order, lisa.y)
|
||||
|
||||
## TODO: Decide on which return values here
|
||||
return zip(lisa.Is, lisa_sig, lisa.p_sim, w.id_order, lisa.y)
|
||||
|
||||
def moran_local_bv(t, attr1, attr2, significance, num_ngbrs, permutations, geom_column, id_col, w_type):
|
||||
def moran_local_bv(subquery, attr1, attr2,
|
||||
permutations, geom_col, id_col, w_type, num_ngbrs):
|
||||
"""
|
||||
Moran's I (local) Bivariate (untested)
|
||||
"""
|
||||
plpy.notice('** Constructing query')
|
||||
|
||||
qvals = {"num_ngbrs": num_ngbrs,
|
||||
"attr1": attr1,
|
||||
"attr2": attr2,
|
||||
"table": t,
|
||||
"geom_col": geom_column,
|
||||
"subquery": subquery,
|
||||
"geom_col": geom_col,
|
||||
"id_col": id_col}
|
||||
|
||||
q = get_query(w_type, qvals)
|
||||
query = pu.construct_neighbor_query(w_type, qvals)
|
||||
|
||||
try:
|
||||
r = plpy.execute(q)
|
||||
plpy.notice('** Query returned with %d rows' % len(r))
|
||||
result = plpy.execute(query)
|
||||
# if there are no neighbors, exit
|
||||
if len(result) == 0:
|
||||
return pu.empty_zipped_array(4)
|
||||
except plpy.SPIError:
|
||||
plpy.notice('** Query failed: "%s"' % q)
|
||||
plpy.notice('** Error: %s' % plpy.SPIError)
|
||||
plpy.notice('** Exiting function')
|
||||
return zip([None], [None], [None], [None])
|
||||
plpy.error("Error: areas of interest query failed, " \
|
||||
"check input parameters")
|
||||
plpy.notice('** Query failed: "%s"' % query)
|
||||
return pu.empty_zipped_array(4)
|
||||
|
||||
## collect attributes
|
||||
attr1_vals = get_attributes(r, 1)
|
||||
attr2_vals = get_attributes(r, 2)
|
||||
attr1_vals = pu.get_attributes(result, 1)
|
||||
attr2_vals = pu.get_attributes(result, 2)
|
||||
|
||||
# create weights
|
||||
w = get_weight(r, w_type, num_ngbrs)
|
||||
weight = pu.get_weight(result, w_type, num_ngbrs)
|
||||
|
||||
# calculate LISA values
|
||||
lisa = ps.esda.moran.Moran_Local_BV(attr1_vals, attr2_vals, w)
|
||||
lisa = ps.esda.moran.Moran_Local_BV(attr1_vals, attr2_vals, weight,
|
||||
permutations=permutations)
|
||||
|
||||
plpy.notice("len of Is: %d" % len(lisa.Is))
|
||||
|
||||
# find clustering of significance
|
||||
lisa_sig = lisa_sig_vals(lisa.p_sim, lisa.q, significance)
|
||||
lisa_sig = quad_position(lisa.q)
|
||||
|
||||
plpy.notice('** Finished calculations')
|
||||
|
||||
return zip(lisa.Is, lisa_sig, lisa.p_sim, w.id_order)
|
||||
|
||||
return zip(lisa.Is, lisa_sig, lisa.p_sim, weight.id_order)
|
||||
|
||||
# Low level functions ----------------------------------------
|
||||
|
||||
@@ -150,7 +233,9 @@ def map_quads(coord):
|
||||
Map a quadrant number to Moran's I designation
|
||||
HH=1, LH=2, LL=3, HL=4
|
||||
Input:
|
||||
:param coord (int): quadrant of a specific measurement
|
||||
@param coord (int): quadrant of a specific measurement
|
||||
Output:
|
||||
classification (one of 'HH', 'LH', 'LL', or 'HL')
|
||||
"""
|
||||
if coord == 1:
|
||||
return 'HH'
|
||||
@@ -163,159 +248,13 @@ def map_quads(coord):
|
||||
else:
|
||||
return None
|
||||
|
||||
def query_attr_select(params):
|
||||
"""
|
||||
Create portion of SELECT statement for attributes inolved in query.
|
||||
:param params: dict of information used in query (column names,
|
||||
table name, etc.)
|
||||
"""
|
||||
|
||||
attrs = [k for k in params
|
||||
if k not in ('id_col', 'geom_col', 'table', 'num_ngbrs', 'subquery')]
|
||||
|
||||
template = "i.\"{%(col)s}\"::numeric As attr%(alias_num)s, "
|
||||
|
||||
attr_string = ""
|
||||
|
||||
for idx, val in enumerate(sorted(attrs)):
|
||||
attr_string += template % {"col": val, "alias_num": idx + 1}
|
||||
|
||||
return attr_string
|
||||
|
||||
def query_attr_where(params):
|
||||
"""
|
||||
Create portion of WHERE clauses for weeding out NULL-valued geometries
|
||||
"""
|
||||
attrs = sorted([k for k in params
|
||||
if k not in ('id_col', 'geom_col', 'table', 'num_ngbrs', 'subquery')])
|
||||
|
||||
attr_string = []
|
||||
|
||||
for attr in attrs:
|
||||
attr_string.append("idx_replace.\"{%s}\" IS NOT NULL" % attr)
|
||||
|
||||
if len(attrs) == 2:
|
||||
attr_string.append("idx_replace.\"{%s}\" <> 0" % attrs[1])
|
||||
|
||||
out = " AND ".join(attr_string)
|
||||
|
||||
return out
|
||||
|
||||
def knn(params):
|
||||
"""SQL query for k-nearest neighbors.
|
||||
:param vars: dict of values to fill template
|
||||
"""
|
||||
|
||||
attr_select = query_attr_select(params)
|
||||
attr_where = query_attr_where(params)
|
||||
|
||||
replacements = {"attr_select": attr_select,
|
||||
"attr_where_i": attr_where.replace("idx_replace", "i"),
|
||||
"attr_where_j": attr_where.replace("idx_replace", "j")}
|
||||
|
||||
query = "SELECT " \
|
||||
"i.\"{id_col}\" As id, " \
|
||||
"%(attr_select)s" \
|
||||
"(SELECT ARRAY(SELECT j.\"{id_col}\" " \
|
||||
"FROM \"({subquery})\" As j " \
|
||||
"WHERE %(attr_where_j)s " \
|
||||
"ORDER BY j.\"{geom_col}\" <-> i.\"{geom_col}\" ASC " \
|
||||
"LIMIT {num_ngbrs} OFFSET 1 ) " \
|
||||
") As neighbors " \
|
||||
"FROM \"({subquery})\" As i " \
|
||||
"WHERE " \
|
||||
"%(attr_where_i)s " \
|
||||
"ORDER BY i.\"{id_col}\" ASC;" % replacements
|
||||
|
||||
return query.format(**params)
|
||||
|
||||
## SQL query for finding queens neighbors (all contiguous polygons)
|
||||
def queen(params):
|
||||
"""SQL query for queen neighbors.
|
||||
:param params: dict of information to fill query
|
||||
"""
|
||||
attr_select = query_attr_select(params)
|
||||
attr_where = query_attr_where(params)
|
||||
|
||||
replacements = {"attr_select": attr_select,
|
||||
"attr_where_i": attr_where.replace("idx_replace", "i"),
|
||||
"attr_where_j": attr_where.replace("idx_replace", "j")}
|
||||
|
||||
query = "SELECT " \
|
||||
"i.\"{id_col}\" As id, " \
|
||||
"%(attr_select)s" \
|
||||
"(SELECT ARRAY(SELECT j.\"{id_col}\" " \
|
||||
"FROM \"({subquery})\" As j " \
|
||||
"WHERE ST_Touches(i.\"{geom_col}\", j.\"{geom_col}\") AND " \
|
||||
"%(attr_where_j)s)" \
|
||||
") As neighbors " \
|
||||
"FROM \"({subquery})\" As i " \
|
||||
"WHERE " \
|
||||
"%(attr_where_i)s " \
|
||||
"ORDER BY i.\"{id_col}\" ASC;" % replacements
|
||||
|
||||
return query.format(**params)
|
||||
|
||||
## to add more weight methods open a ticket or pull request
|
||||
|
||||
def get_query(w_type, query_vals):
|
||||
"""Return requested query.
|
||||
:param w_type: type of neighbors to calculate (knn or queen)
|
||||
:param query_vals: values used to construct the query
|
||||
"""
|
||||
|
||||
if w_type == 'knn':
|
||||
return knn(query_vals)
|
||||
else:
|
||||
return queen(query_vals)
|
||||
|
||||
def get_attributes(query_res, attr_num):
|
||||
"""
|
||||
:param query_res: query results with attributes and neighbors
|
||||
:param attr_num: attribute number (1, 2, ...)
|
||||
"""
|
||||
return np.array([x['attr' + str(attr_num)] for x in query_res], dtype=np.float)
|
||||
|
||||
## Build weight object
|
||||
def get_weight(query_res, w_type='queen', num_ngbrs=5):
|
||||
"""
|
||||
Construct PySAL weight from return value of query
|
||||
:param query_res: query results with attributes and neighbors
|
||||
"""
|
||||
if w_type == 'knn':
|
||||
row_normed_weights = [1.0 / float(num_ngbrs)] * num_ngbrs
|
||||
weights = {x['id']: row_normed_weights for x in query_res}
|
||||
elif w_type == 'queen':
|
||||
weights = {x['id']: [1.0 / len(x['neighbors'])] * len(x['neighbors'])
|
||||
if len(x['neighbors']) > 0
|
||||
else [] for x in query_res}
|
||||
|
||||
neighbors = {x['id']: x['neighbors'] for x in query_res}
|
||||
|
||||
return ps.W(neighbors, weights)
|
||||
|
||||
def quad_position(quads):
|
||||
"""
|
||||
Produce Moran's I classification based of n
|
||||
Input:
|
||||
@param quads ndarray: an array of quads classified by
|
||||
1-4 (PySAL default)
|
||||
Output:
|
||||
@param list: an array of quads classied by 'HH', 'LL', etc.
|
||||
"""
|
||||
|
||||
lisa_sig = np.array([map_quads(q) for q in quads])
|
||||
|
||||
return lisa_sig
|
||||
|
||||
def lisa_sig_vals(pvals, quads, threshold):
|
||||
"""
|
||||
Produce Moran's I classification based of n
|
||||
"""
|
||||
|
||||
sig = (pvals <= threshold)
|
||||
|
||||
lisa_sig = np.empty(len(sig), np.chararray)
|
||||
|
||||
for idx, val in enumerate(sig):
|
||||
if val:
|
||||
lisa_sig[idx] = map_quads(quads[idx])
|
||||
else:
|
||||
lisa_sig[idx] = 'Not significant'
|
||||
|
||||
return lisa_sig
|
||||
return [map_quads(q) for q in quads]
|
||||
|
||||
1
src/py/crankshaft/crankshaft/pysal_utils/__init__.py
Normal file
1
src/py/crankshaft/crankshaft/pysal_utils/__init__.py
Normal file
@@ -0,0 +1 @@
|
||||
from pysal_utils import *
|
||||
152
src/py/crankshaft/crankshaft/pysal_utils/pysal_utils.py
Normal file
152
src/py/crankshaft/crankshaft/pysal_utils/pysal_utils.py
Normal file
@@ -0,0 +1,152 @@
|
||||
"""
|
||||
Utilities module for generic PySAL functionality, mainly centered on translating queries into numpy arrays or PySAL weights objects
|
||||
"""
|
||||
|
||||
import numpy as np
|
||||
import pysal as ps
|
||||
|
||||
def construct_neighbor_query(w_type, query_vals):
|
||||
"""Return query (a string) used for finding neighbors
|
||||
@param w_type text: type of neighbors to calculate ('knn' or 'queen')
|
||||
@param query_vals dict: values used to construct the query
|
||||
"""
|
||||
|
||||
if w_type.lower() == 'knn':
|
||||
return knn(query_vals)
|
||||
else:
|
||||
return queen(query_vals)
|
||||
|
||||
## Build weight object
|
||||
def get_weight(query_res, w_type='knn', num_ngbrs=5):
|
||||
"""
|
||||
Construct PySAL weight from return value of query
|
||||
@param query_res: query results with attributes and neighbors
|
||||
"""
|
||||
if w_type.lower() == 'knn':
|
||||
row_normed_weights = [1.0 / float(num_ngbrs)] * num_ngbrs
|
||||
weights = {x['id']: row_normed_weights for x in query_res}
|
||||
else:
|
||||
weights = {x['id']: [1.0 / len(x['neighbors'])] * len(x['neighbors'])
|
||||
if len(x['neighbors']) > 0
|
||||
else [] for x in query_res}
|
||||
|
||||
neighbors = {x['id']: x['neighbors'] for x in query_res}
|
||||
|
||||
return ps.W(neighbors, weights)
|
||||
|
||||
def query_attr_select(params):
|
||||
"""
|
||||
Create portion of SELECT statement for attributes inolved in query.
|
||||
@param params: dict of information used in query (column names,
|
||||
table name, etc.)
|
||||
"""
|
||||
|
||||
attrs = [k for k in params
|
||||
if k not in ('id_col', 'geom_col', 'subquery', 'num_ngbrs')]
|
||||
|
||||
template = "i.\"{%(col)s}\"::numeric As attr%(alias_num)s, "
|
||||
|
||||
attr_string = ""
|
||||
|
||||
for idx, val in enumerate(sorted(attrs)):
|
||||
attr_string += template % {"col": val, "alias_num": idx + 1}
|
||||
|
||||
return attr_string
|
||||
|
||||
def query_attr_where(params):
|
||||
"""
|
||||
Create portion of WHERE clauses for weeding out NULL-valued geometries
|
||||
"""
|
||||
attrs = sorted([k for k in params
|
||||
if k not in ('id_col', 'geom_col', 'subquery', 'num_ngbrs')])
|
||||
|
||||
attr_string = []
|
||||
|
||||
for attr in attrs:
|
||||
attr_string.append("idx_replace.\"{%s}\" IS NOT NULL" % attr)
|
||||
|
||||
if len(attrs) == 2:
|
||||
attr_string.append("idx_replace.\"{%s}\" <> 0" % attrs[1])
|
||||
|
||||
out = " AND ".join(attr_string)
|
||||
|
||||
return out
|
||||
|
||||
def knn(params):
|
||||
"""SQL query for k-nearest neighbors.
|
||||
@param vars: dict of values to fill template
|
||||
"""
|
||||
|
||||
attr_select = query_attr_select(params)
|
||||
attr_where = query_attr_where(params)
|
||||
|
||||
replacements = {"attr_select": attr_select,
|
||||
"attr_where_i": attr_where.replace("idx_replace", "i"),
|
||||
"attr_where_j": attr_where.replace("idx_replace", "j")}
|
||||
|
||||
query = "SELECT " \
|
||||
"i.\"{id_col}\" As id, " \
|
||||
"%(attr_select)s" \
|
||||
"(SELECT ARRAY(SELECT j.\"{id_col}\" " \
|
||||
"FROM ({subquery}) As j " \
|
||||
"WHERE " \
|
||||
"i.\"{id_col}\" <> j.\"{id_col}\" AND " \
|
||||
"%(attr_where_j)s " \
|
||||
"ORDER BY " \
|
||||
"j.\"{geom_col}\" <-> i.\"{geom_col}\" ASC " \
|
||||
"LIMIT {num_ngbrs})" \
|
||||
") As neighbors " \
|
||||
"FROM ({subquery}) As i " \
|
||||
"WHERE " \
|
||||
"%(attr_where_i)s " \
|
||||
"ORDER BY i.\"{id_col}\" ASC;" % replacements
|
||||
|
||||
return query.format(**params)
|
||||
|
||||
## SQL query for finding queens neighbors (all contiguous polygons)
|
||||
def queen(params):
|
||||
"""SQL query for queen neighbors.
|
||||
@param params dict: information to fill query
|
||||
"""
|
||||
attr_select = query_attr_select(params)
|
||||
attr_where = query_attr_where(params)
|
||||
|
||||
replacements = {"attr_select": attr_select,
|
||||
"attr_where_i": attr_where.replace("idx_replace", "i"),
|
||||
"attr_where_j": attr_where.replace("idx_replace", "j")}
|
||||
|
||||
query = "SELECT " \
|
||||
"i.\"{id_col}\" As id, " \
|
||||
"%(attr_select)s" \
|
||||
"(SELECT ARRAY(SELECT j.\"{id_col}\" " \
|
||||
"FROM ({subquery}) As j " \
|
||||
"WHERE i.\"{id_col}\" <> j.\"{id_col}\" AND " \
|
||||
"ST_Touches(i.\"{geom_col}\", j.\"{geom_col}\") AND " \
|
||||
"%(attr_where_j)s)" \
|
||||
") As neighbors " \
|
||||
"FROM ({subquery}) As i " \
|
||||
"WHERE " \
|
||||
"%(attr_where_i)s " \
|
||||
"ORDER BY i.\"{id_col}\" ASC;" % replacements
|
||||
|
||||
return query.format(**params)
|
||||
|
||||
## to add more weight methods open a ticket or pull request
|
||||
|
||||
def get_attributes(query_res, attr_num=1):
|
||||
"""
|
||||
@param query_res: query results with attributes and neighbors
|
||||
@param attr_num: attribute number (1, 2, ...)
|
||||
"""
|
||||
return np.array([x['attr' + str(attr_num)] for x in query_res], dtype=np.float)
|
||||
|
||||
def empty_zipped_array(num_nones):
|
||||
"""
|
||||
prepare return values for cases of empty weights objects (no neighbors)
|
||||
Input:
|
||||
@param num_nones int: number of columns (e.g., 4)
|
||||
Output:
|
||||
[(None, None, None, None)]
|
||||
"""
|
||||
|
||||
return [tuple([None] * num_nones)]
|
||||
70
src/py/crankshaft/test/fixtures/moran.json
vendored
70
src/py/crankshaft/test/fixtures/moran.json
vendored
@@ -1,52 +1,52 @@
|
||||
[[0.9319096128346788, "HH"],
|
||||
[-1.135787401862846, "HL"],
|
||||
[0.11732030672508517, "Not significant"],
|
||||
[0.6152779669180425, "Not significant"],
|
||||
[-0.14657336660125297, "Not significant"],
|
||||
[0.6967858120189607, "Not significant"],
|
||||
[0.07949310115714454, "Not significant"],
|
||||
[0.4703198759258987, "Not significant"],
|
||||
[0.4421125200498064, "Not significant"],
|
||||
[0.5724288737143592, "Not significant"],
|
||||
[0.11732030672508517, "LL"],
|
||||
[0.6152779669180425, "LL"],
|
||||
[-0.14657336660125297, "LH"],
|
||||
[0.6967858120189607, "LL"],
|
||||
[0.07949310115714454, "HH"],
|
||||
[0.4703198759258987, "HH"],
|
||||
[0.4421125200498064, "HH"],
|
||||
[0.5724288737143592, "LL"],
|
||||
[0.8970743435692062, "LL"],
|
||||
[0.18327334401918674, "Not significant"],
|
||||
[-0.01466729201304962, "Not significant"],
|
||||
[0.3481559372544409, "Not significant"],
|
||||
[0.06547094736902978, "Not significant"],
|
||||
[0.18327334401918674, "LL"],
|
||||
[-0.01466729201304962, "HL"],
|
||||
[0.3481559372544409, "LL"],
|
||||
[0.06547094736902978, "LL"],
|
||||
[0.15482141569329988, "HH"],
|
||||
[0.4373841193538136, "Not significant"],
|
||||
[0.15971286468915544, "Not significant"],
|
||||
[1.0543588860308968, "Not significant"],
|
||||
[0.4373841193538136, "HH"],
|
||||
[0.15971286468915544, "LL"],
|
||||
[1.0543588860308968, "HH"],
|
||||
[1.7372866900020818, "HH"],
|
||||
[1.091998586053999, "LL"],
|
||||
[0.1171572584252222, "Not significant"],
|
||||
[0.08438455015300014, "Not significant"],
|
||||
[0.06547094736902978, "Not significant"],
|
||||
[0.1171572584252222, "HH"],
|
||||
[0.08438455015300014, "LL"],
|
||||
[0.06547094736902978, "LL"],
|
||||
[0.15482141569329985, "HH"],
|
||||
[1.1627044812890683, "HH"],
|
||||
[0.06547094736902978, "Not significant"],
|
||||
[0.795275137550483, "Not significant"],
|
||||
[0.06547094736902978, "LL"],
|
||||
[0.795275137550483, "HH"],
|
||||
[0.18562939195219, "LL"],
|
||||
[0.3010757406693439, "Not significant"],
|
||||
[0.3010757406693439, "LL"],
|
||||
[2.8205795942839376, "HH"],
|
||||
[0.11259190602909264, "Not significant"],
|
||||
[-0.07116352791516614, "Not significant"],
|
||||
[-0.09945240794119009, "Not significant"],
|
||||
[0.11259190602909264, "LL"],
|
||||
[-0.07116352791516614, "HL"],
|
||||
[-0.09945240794119009, "LH"],
|
||||
[0.18562939195219, "LL"],
|
||||
[0.1832733440191868, "Not significant"],
|
||||
[-0.39054253768447705, "Not significant"],
|
||||
[0.1832733440191868, "LL"],
|
||||
[-0.39054253768447705, "HL"],
|
||||
[-0.1672071289487642, "HL"],
|
||||
[0.3337669247916343, "Not significant"],
|
||||
[0.2584386102554792, "Not significant"],
|
||||
[0.3337669247916343, "HH"],
|
||||
[0.2584386102554792, "HH"],
|
||||
[-0.19733845476322634, "HL"],
|
||||
[-0.9379282899805409, "LH"],
|
||||
[-0.028770969951095866, "Not significant"],
|
||||
[0.051367269430983485, "Not significant"],
|
||||
[-0.028770969951095866, "LH"],
|
||||
[0.051367269430983485, "LL"],
|
||||
[-0.2172548045913472, "LH"],
|
||||
[0.05136726943098351, "Not significant"],
|
||||
[0.04191046803899837, "Not significant"],
|
||||
[0.05136726943098351, "LL"],
|
||||
[0.04191046803899837, "LL"],
|
||||
[0.7482357030403517, "HH"],
|
||||
[-0.014585767863118111, "Not significant"],
|
||||
[0.5410013139159929, "Not significant"],
|
||||
[-0.014585767863118111, "LH"],
|
||||
[0.5410013139159929, "HH"],
|
||||
[1.0223932668429925, "LL"],
|
||||
[1.4179402898927476, "LL"]]
|
||||
[1.4179402898927476, "LL"]]
|
||||
@@ -1,8 +1,6 @@
|
||||
import unittest
|
||||
import numpy as np
|
||||
|
||||
import unittest
|
||||
|
||||
|
||||
# from mock_plpy import MockPlPy
|
||||
# plpy = MockPlPy()
|
||||
@@ -12,11 +10,12 @@ import unittest
|
||||
from helper import plpy, fixture_file
|
||||
|
||||
import crankshaft.clustering as cc
|
||||
import crankshaft.pysal_utils as pu
|
||||
from crankshaft import random_seeds
|
||||
import json
|
||||
|
||||
class MoranTest(unittest.TestCase):
|
||||
"""Testing class for Moran's I functions."""
|
||||
"""Testing class for Moran's I functions"""
|
||||
|
||||
def setUp(self):
|
||||
plpy._reset()
|
||||
@@ -30,7 +29,7 @@ class MoranTest(unittest.TestCase):
|
||||
self.moran_data = json.loads(open(fixture_file('moran.json')).read())
|
||||
|
||||
def test_map_quads(self):
|
||||
"""Test map_quads."""
|
||||
"""Test map_quads"""
|
||||
self.assertEqual(cc.map_quads(1), 'HH')
|
||||
self.assertEqual(cc.map_quads(2), 'LH')
|
||||
self.assertEqual(cc.map_quads(3), 'LL')
|
||||
@@ -38,80 +37,8 @@ class MoranTest(unittest.TestCase):
|
||||
self.assertEqual(cc.map_quads(33), None)
|
||||
self.assertEqual(cc.map_quads('andy'), None)
|
||||
|
||||
def test_query_attr_select(self):
|
||||
"""Test query_attr_select."""
|
||||
|
||||
ans = "i.\"{attr1}\"::numeric As attr1, " \
|
||||
"i.\"{attr2}\"::numeric As attr2, "
|
||||
|
||||
self.assertEqual(cc.query_attr_select(self.params), ans)
|
||||
|
||||
def test_query_attr_where(self):
|
||||
"""Test query_attr_where."""
|
||||
|
||||
ans = "idx_replace.\"{attr1}\" IS NOT NULL AND "\
|
||||
"idx_replace.\"{attr2}\" IS NOT NULL AND "\
|
||||
"idx_replace.\"{attr2}\" <> 0"
|
||||
|
||||
self.assertEqual(cc.query_attr_where(self.params), ans)
|
||||
|
||||
def test_knn(self):
|
||||
"""Test knn function."""
|
||||
|
||||
ans = "SELECT i.\"cartodb_id\" As id, i.\"andy\"::numeric As attr1, " \
|
||||
"i.\"jay_z\"::numeric As attr2, (SELECT ARRAY(SELECT j.\"cartodb_id\" " \
|
||||
"FROM \"(SELECT * FROM a_list)\" As j WHERE j.\"andy\" IS NOT NULL AND " \
|
||||
"j.\"jay_z\" IS NOT NULL AND j.\"jay_z\" <> 0 ORDER BY " \
|
||||
"j.\"the_geom\" <-> i.\"the_geom\" ASC LIMIT 321 OFFSET 1 ) ) " \
|
||||
"As neighbors FROM \"(SELECT * FROM a_list)\" As i WHERE i.\"andy\" IS NOT " \
|
||||
"NULL AND i.\"jay_z\" IS NOT NULL AND i.\"jay_z\" <> 0 ORDER " \
|
||||
"BY i.\"cartodb_id\" ASC;"
|
||||
|
||||
self.assertEqual(cc.knn(self.params), ans)
|
||||
|
||||
def test_queen(self):
|
||||
"""Test queen neighbors function."""
|
||||
|
||||
ans = "SELECT i.\"cartodb_id\" As id, i.\"andy\"::numeric As attr1, " \
|
||||
"i.\"jay_z\"::numeric As attr2, (SELECT ARRAY(SELECT " \
|
||||
"j.\"cartodb_id\" FROM \"(SELECT * FROM a_list)\" As j WHERE ST_Touches(" \
|
||||
"i.\"the_geom\", j.\"the_geom\") AND j.\"andy\" IS NOT NULL " \
|
||||
"AND j.\"jay_z\" IS NOT NULL AND j.\"jay_z\" <> 0)) As " \
|
||||
"neighbors FROM \"(SELECT * FROM a_list)\" As i WHERE i.\"andy\" IS NOT NULL " \
|
||||
"AND i.\"jay_z\" IS NOT NULL AND i.\"jay_z\" <> 0 ORDER BY " \
|
||||
"i.\"cartodb_id\" ASC;"
|
||||
|
||||
self.assertEqual(cc.queen(self.params), ans)
|
||||
|
||||
def test_get_query(self):
|
||||
"""Test get_query."""
|
||||
|
||||
ans = "SELECT i.\"cartodb_id\" As id, i.\"andy\"::numeric As attr1, " \
|
||||
"i.\"jay_z\"::numeric As attr2, (SELECT ARRAY(SELECT " \
|
||||
"j.\"cartodb_id\" FROM \"(SELECT * FROM a_list)\" As j WHERE j.\"andy\" IS " \
|
||||
"NOT NULL AND j.\"jay_z\" IS NOT NULL AND j.\"jay_z\" <> 0 " \
|
||||
"ORDER BY j.\"the_geom\" <-> i.\"the_geom\" ASC LIMIT 321 " \
|
||||
"OFFSET 1 ) ) As neighbors FROM \"(SELECT * FROM a_list)\" As i WHERE " \
|
||||
"i.\"andy\" IS NOT NULL AND i.\"jay_z\" IS NOT NULL AND " \
|
||||
"i.\"jay_z\" <> 0 ORDER BY i.\"cartodb_id\" ASC;"
|
||||
|
||||
self.assertEqual(cc.get_query('knn', self.params), ans)
|
||||
|
||||
def test_get_attributes(self):
|
||||
"""Test get_attributes."""
|
||||
|
||||
## need to add tests
|
||||
|
||||
self.assertEqual(True, True)
|
||||
|
||||
def test_get_weight(self):
|
||||
"""Test get_weight."""
|
||||
|
||||
self.assertEqual(True, True)
|
||||
|
||||
|
||||
def test_quad_position(self):
|
||||
"""Test lisa_sig_vals."""
|
||||
"""Test lisa_sig_vals"""
|
||||
|
||||
quads = np.array([1, 2, 3, 4], np.int)
|
||||
|
||||
@@ -125,7 +52,7 @@ class MoranTest(unittest.TestCase):
|
||||
data = [ { 'id': d['id'], 'attr1': d['value'], 'neighbors': d['neighbors'] } for d in self.neighbors_data]
|
||||
plpy._define_result('select', data)
|
||||
random_seeds.set_random_seeds(1234)
|
||||
result = cc.moran_local('table', 'value', 0.05, 5, 99, 'the_geom', 'cartodb_id', 'knn')
|
||||
result = cc.moran_local('subquery', 'value', 'knn', 5, 99, 'the_geom', 'cartodb_id')
|
||||
result = [(row[0], row[1]) for row in result]
|
||||
expected = self.moran_data
|
||||
for ([res_val, res_quad], [exp_val, exp_quad]) in zip(result, expected):
|
||||
@@ -137,8 +64,20 @@ class MoranTest(unittest.TestCase):
|
||||
data = [ { 'id': d['id'], 'attr1': d['value'], 'attr2': 1, 'neighbors': d['neighbors'] } for d in self.neighbors_data]
|
||||
plpy._define_result('select', data)
|
||||
random_seeds.set_random_seeds(1234)
|
||||
result = cc.moran_local_rate('table', 'numerator', 'denominator', 0.05, 5, 99, 'the_geom', 'cartodb_id', 'knn')
|
||||
result = cc.moran_local_rate('subquery', 'numerator', 'denominator', 'knn', 5, 99, 'the_geom', 'cartodb_id')
|
||||
print 'result == None? ', result == None
|
||||
result = [(row[0], row[1]) for row in result]
|
||||
expected = self.moran_data
|
||||
for ([res_val, res_quad], [exp_val, exp_quad]) in zip(result, expected):
|
||||
self.assertAlmostEqual(res_val, exp_val)
|
||||
|
||||
def test_moran(self):
|
||||
"""Test Moran's I global"""
|
||||
data = [{ 'id': d['id'], 'attr1': d['value'], 'neighbors': d['neighbors'] } for d in self.neighbors_data]
|
||||
plpy._define_result('select', data)
|
||||
random_seeds.set_random_seeds(1235)
|
||||
result = cc.moran('table', 'value', 'knn', 5, 99, 'the_geom', 'cartodb_id')
|
||||
print 'result == None?', result == None
|
||||
result_moran = result[0][0]
|
||||
expected_moran = np.array([row[0] for row in self.moran_data]).mean()
|
||||
self.assertAlmostEqual(expected_moran, result_moran, delta=10e-2)
|
||||
|
||||
107
src/py/crankshaft/test/test_pysal_utils.py
Normal file
107
src/py/crankshaft/test/test_pysal_utils.py
Normal file
@@ -0,0 +1,107 @@
|
||||
import unittest
|
||||
|
||||
import crankshaft.pysal_utils as pu
|
||||
from crankshaft import random_seeds
|
||||
|
||||
|
||||
class PysalUtilsTest(unittest.TestCase):
|
||||
"""Testing class for utility functions related to PySAL integrations"""
|
||||
|
||||
def setUp(self):
|
||||
self.params = {"id_col": "cartodb_id",
|
||||
"attr1": "andy",
|
||||
"attr2": "jay_z",
|
||||
"subquery": "SELECT * FROM a_list",
|
||||
"geom_col": "the_geom",
|
||||
"num_ngbrs": 321}
|
||||
|
||||
def test_query_attr_select(self):
|
||||
"""Test query_attr_select"""
|
||||
|
||||
ans = "i.\"{attr1}\"::numeric As attr1, " \
|
||||
"i.\"{attr2}\"::numeric As attr2, "
|
||||
|
||||
self.assertEqual(pu.query_attr_select(self.params), ans)
|
||||
|
||||
def test_query_attr_where(self):
|
||||
"""Test pu.query_attr_where"""
|
||||
|
||||
ans = "idx_replace.\"{attr1}\" IS NOT NULL AND " \
|
||||
"idx_replace.\"{attr2}\" IS NOT NULL AND " \
|
||||
"idx_replace.\"{attr2}\" <> 0"
|
||||
|
||||
self.assertEqual(pu.query_attr_where(self.params), ans)
|
||||
|
||||
def test_knn(self):
|
||||
"""Test knn neighbors constructor"""
|
||||
|
||||
ans = "SELECT i.\"cartodb_id\" As id, " \
|
||||
"i.\"andy\"::numeric As attr1, " \
|
||||
"i.\"jay_z\"::numeric As attr2, " \
|
||||
"(SELECT ARRAY(SELECT j.\"cartodb_id\" " \
|
||||
"FROM (SELECT * FROM a_list) As j " \
|
||||
"WHERE " \
|
||||
"i.\"cartodb_id\" <> j.\"cartodb_id\" AND " \
|
||||
"j.\"andy\" IS NOT NULL AND " \
|
||||
"j.\"jay_z\" IS NOT NULL AND " \
|
||||
"j.\"jay_z\" <> 0 " \
|
||||
"ORDER BY " \
|
||||
"j.\"the_geom\" <-> i.\"the_geom\" ASC " \
|
||||
"LIMIT 321)) As neighbors " \
|
||||
"FROM (SELECT * FROM a_list) As i " \
|
||||
"WHERE i.\"andy\" IS NOT NULL AND " \
|
||||
"i.\"jay_z\" IS NOT NULL AND " \
|
||||
"i.\"jay_z\" <> 0 " \
|
||||
"ORDER BY i.\"cartodb_id\" ASC;"
|
||||
|
||||
self.assertEqual(pu.knn(self.params), ans)
|
||||
|
||||
def test_queen(self):
|
||||
"""Test queen neighbors constructor"""
|
||||
|
||||
ans = "SELECT i.\"cartodb_id\" As id, " \
|
||||
"i.\"andy\"::numeric As attr1, " \
|
||||
"i.\"jay_z\"::numeric As attr2, " \
|
||||
"(SELECT ARRAY(SELECT j.\"cartodb_id\" " \
|
||||
"FROM (SELECT * FROM a_list) As j " \
|
||||
"WHERE " \
|
||||
"i.\"cartodb_id\" <> j.\"cartodb_id\" AND " \
|
||||
"ST_Touches(i.\"the_geom\", " \
|
||||
"j.\"the_geom\") AND " \
|
||||
"j.\"andy\" IS NOT NULL AND " \
|
||||
"j.\"jay_z\" IS NOT NULL AND " \
|
||||
"j.\"jay_z\" <> 0)" \
|
||||
") As neighbors " \
|
||||
"FROM (SELECT * FROM a_list) As i " \
|
||||
"WHERE i.\"andy\" IS NOT NULL AND " \
|
||||
"i.\"jay_z\" IS NOT NULL AND " \
|
||||
"i.\"jay_z\" <> 0 " \
|
||||
"ORDER BY i.\"cartodb_id\" ASC;"
|
||||
|
||||
self.assertEqual(pu.queen(self.params), ans)
|
||||
|
||||
def test_construct_neighbor_query(self):
|
||||
"""Test construct_neighbor_query"""
|
||||
|
||||
# Compare to raw knn query
|
||||
self.assertEqual(pu.construct_neighbor_query('knn', self.params),
|
||||
pu.knn(self.params))
|
||||
|
||||
def test_get_attributes(self):
|
||||
"""Test get_attributes"""
|
||||
|
||||
## need to add tests
|
||||
|
||||
self.assertEqual(True, True)
|
||||
|
||||
def test_get_weight(self):
|
||||
"""Test get_weight"""
|
||||
|
||||
self.assertEqual(True, True)
|
||||
|
||||
def test_empty_zipped_array(self):
|
||||
"""Test empty_zipped_array"""
|
||||
ans2 = [(None, None)]
|
||||
ans4 = [(None, None, None, None)]
|
||||
self.assertEqual(pu.empty_zipped_array(2), ans2)
|
||||
self.assertEqual(pu.empty_zipped_array(4), ans4)
|
||||
Reference in New Issue
Block a user